Code: Select all
[07:09:11] + Closed connections
[07:09:11]
[07:09:11] + Processing work unit
[07:09:11] Work type a1 not eligible for variable processors
[07:09:11] Core required: FahCore_a1.exe
[07:09:11] Core found.
[07:09:11] Using generic mpiexec calls
[07:09:11] Working on queue slot 04 [August 28 07:09:11 UTC]
[07:09:11] + Working ...
[07:09:11] - Calling 'mpiexec -np 4 -channel auto -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 04 -checkpoint 15 -verbose -lifeline 3284 -version 622'
[07:09:11]
[07:09:11] *------------------------------*
[07:09:11] Folding@Home Gromacs SMP Core
[07:09:11] Version 1.74 (March 10, 2007)
[07:09:11]
[07:09:11] Preparing to commence simulation
[07:09:11] - Ensuring status. Please wait.
[07:09:16] - Starting from initial work packet
[07:09:16]
[07:09:16] Project: 2665 (Run 3, Clone 957, Gen 22)
[07:09:16]
[07:09:17] Assembly optimizations on if available.
[07:09:17] Entering M.D.
[07:09:38] percent)
[07:09:38] - Starting from initial work packet
[07:09:38]
[07:09:38] Project: 2665 (Run 3, Clone 957, Gen 22)
[07:09:38]
[07:09:39] Entering M.D.
[07:09:45] Rejecting checkpoint
[07:09:47] Protein: HGG in water
[07:09:47] Writing local files
[07:09:54] Extra SSE boost OK.
[07:09:55] Writing local files
[07:09:55] Completed 0 out of 250000 steps (0 percent)
[07:24:56] Timered checkpoint triggered.
[07:25:07] Writing local files
[07:25:07] Completed 2500 out of 250000 steps (1 percent)
{snip}
[09:42:15] Completed 25000 out of 250000 steps (10 percent)
[09:43:56] Warning: long 1-4 interactions
[09:43:56] Gromacs cannot continue further.
[09:43:56] Going to send back what have done.
[09:43:56] logfile size: 27894
[09:43:56] - Writing 28430 bytes of core data to disk...
[09:43:56] ... Done.
[09:43:56] - Failed to delete work/wudata_04.goe
[09:43:56] Warning: check for stray files
[09:45:56]
[09:45:56] Folding@home Core Shutdown: EARLY_UNIT_END
[09:45:56]
[09:45:56] Folding@home Core Shutdown: EARLY_UNIT_END
[09:45:59] CoreStatus = 7B (123)
[09:45:59] Client-core communications error: ERROR 0x7b
[09:45:59] Deleting current work unit & continuing...
[09:45:59] Using generic mpiexec calls
[09:48:03] - Warning: Could not delete all work unit files (4): Core returned invalid code
[09:48:03] Trying to send all finished work units
[09:48:03] + No unsent completed units remaining.
[09:48:03] - Preparing to get new work unit...
[09:48:03] + Attempting to get work packet
[09:48:03] - Will indicate memory of 3326 MB
[09:48:03] - Connecting to assignment server
[09:48:03] Connecting to http://assign.stanford.edu:8080/
[09:48:03] Posted data.
[09:48:03] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[09:48:03] + News From Folding@Home: Welcome to Folding@Home
[09:48:03] Loaded queue successfully.
[09:48:03] Connecting to http://171.64.65.64:8080/
[09:48:09] Posted data.
[09:48:09] Initial: 0000; - Receiving payload (expected size: 4738603)
[09:48:31] - Downloaded at ~210 kB/s
[09:48:31] - Averaged speed for that direction ~196 kB/s
[09:48:31] + Received work.
[09:48:31] + Closed connections
[09:48:36]
[09:48:36] + Processing work unit
[09:48:36] Work type a1 not eligible for variable processors
[09:48:36] Core required: FahCore_a1.exe
[09:48:36] Core found.
[09:48:36] Using generic mpiexec calls
[09:48:36] Working on queue slot 05 [August 28 09:48:36 UTC]
[09:48:36] + Working ...
[09:48:36] - Calling 'mpiexec -np 4 -channel auto -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 05 -checkpoint 15 -verbose -lifeline 3284 -version 622'
[09:48:36]
[09:48:36] *------------------------------*
[09:48:36] Folding@Home Gromacs SMP Core
[09:48:36] Version 1.74 (March 10, 2007)
[09:48:36]
[09:48:36] Preparing to commence simulation
[09:48:36] - Ensuring status. Please wait.
[09:48:41] - Starting from initial work packet
[09:48:41]
[09:48:41] Project: 2665 (Run 3, Clone 957, Gen 22)
[09:48:41]
[09:48:42] Assembly optimizations on if available.
[09:48:42] Entering M.D.
[09:49:03] al work packet
[09:49:03]
[09:49:03] Project: 2665 (Run 3, Clone 957, Gen 22)
[09:49:03]
[09:49:04] 65 (Run 3, Clone 957, Gen 22)
[09:49:04]
[09:49:04] Entering M.D.
[09:49:10] Rejecting checkpoint
[09:49:12] Protein: HGG in water
[09:49:12] Writing local files
[09:49:20] Extra SSE boost OK.
[09:49:20] Writing local files
[09:49:21] Completed 0 out of 250000 steps (0 percent)
[10:04:20] Timered checkpoint triggered.
[10:04:31] Writing local files
[10:04:32] Completed 2500 out of 250000 steps (1 percent)
{snip}
[12:21:07] Timered checkpoint triggered.
[12:21:20] Writing local files
[12:21:20] Completed 25000 out of 250000 steps (10 percent)
[12:23:00] Warning: long 1-4 interactions
[12:23:01] Gromacs cannot continue further.
[12:23:01] Going to send back what have done.
[12:23:01] logfile size: 27894
[12:23:01] - Writing 28430 bytes of core data to disk...
[12:23:01] ... Done.
[12:25:01]
[12:25:01] Folding@home Core Shutdown: EARLY_UNIT_END
[12:25:01]
[12:25:01] Folding@home Core Shutdown: EARLY_UNIT_END
[12:25:04] CoreStatus = 7B (123)
[12:25:04] Client-core communications error: ERROR 0x7b
[12:25:04] Deleting current work unit & continuing...
[12:25:04] Using generic mpiexec calls
[12:27:08] - Warning: Could not delete all work unit files (5): Core returned invalid code
[12:27:08] Trying to send all finished work units
[12:27:08] + No unsent completed units remaining.
[12:27:08] - Preparing to get new work unit...
[12:27:08] + Attempting to get work packet
[12:27:08] - Will indicate memory of 3326 MB
[12:27:08] - Connecting to assignment server
[12:27:08] Connecting to http://assign.stanford.edu:8080/
[12:27:09] Posted data.
[12:27:09] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[12:27:09] + News From Folding@Home: Welcome to Folding@Home
[12:27:09] Loaded queue successfully.
[12:27:09] Connecting to http://171.64.65.64:8080/
[12:27:14] Posted data.
[12:27:14] Initial: 0000; - Receiving payload (expected size: 4738603)
[12:27:37] - Downloaded at ~201 kB/s
[12:27:37] - Averaged speed for that direction ~197 kB/s
[12:27:37] + Received work.
[12:27:37] + Closed connections
[12:27:42]
[12:27:42] + Processing work unit
[12:27:42] Work type a1 not eligible for variable processors
[12:27:42] Core required: FahCore_a1.exe
[12:27:42] Core found.
[12:27:42] Using generic mpiexec calls
[12:27:42] Working on queue slot 06 [August 28 12:27:42 UTC]
[12:27:42] + Working ...
[12:27:42] - Calling 'mpiexec -np 4 -channel auto -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 06 -checkpoint 15 -verbose -lifeline 3284 -version 622'
[12:27:42]
[12:27:42] *------------------------------*
[12:27:42] Folding@Home Gromacs SMP Core
[12:27:42] Version 1.74 (March 10, 2007)
[12:27:42]
[12:27:42] Preparing to commence simulation
[12:27:42] - Ensuring status. Please wait.
[12:27:47] - Starting from initial work packet
[12:27:47]
[12:27:47] Project: 2665 (Run 3, Clone 957, Gen 22)
[12:27:47]
[12:27:48] Assembly optimizations on if available.
[12:27:48] Entering M.D.
[12:28:09] percent)
[12:28:09] - Starting from initial work packet
[12:28:09]
[12:28:09] Project: 2665 (Run 3, Clone 957, Gen 22)
[12:28:09]
[12:28:10] Entering M.D.
[12:28:16] Rejecting checkpoint
[12:28:18] Protein: HGG in water
[12:28:18] Writing local files
[12:28:25] Extra SSE boost OK.
[12:28:26] Writing local files
[12:28:26] Completed 0 out of 250000 steps (0 percent)
[12:43:26] Timered checkpoint triggered.
[12:43:40] Writing local files
[12:43:40] Completed 2500 out of 250000 steps (1 percent)
{snip}
[15:00:29] Timered checkpoint triggered.
[15:00:44] Writing local files
[15:00:44] Completed 25000 out of 250000 steps (10 percent)
[15:02:24] Warning: long 1-4 interactions
[15:02:25] Gromacs cannot continue further.
[15:02:25] Going to send back what have done.
[15:02:25] logfile size: 27894
[15:02:25] - Writing 28430 bytes of core data to disk...
[15:02:25] ... Done.
[15:04:25]
[15:04:25] Folding@home Core Shutdown: EARLY_UNIT_END
[15:04:25]
[15:04:25] Folding@home Core Shutdown: EARLY_UNIT_END
[15:04:28] CoreStatus = 7B (123)
[15:04:28] Client-core communications error: ERROR 0x7b
[15:04:28] - Attempting to download new core...
[15:04:28] + Downloading new core: FahCore_a1.exe
[15:04:28] Downloading core (/~pande/Win32/x86/Core_a1.fah from www.stanford.edu)
[15:04:28] Initial: AFDE; + 10240 bytes downloaded
{snip}
[15:05:17] Initial: 6A52; + 317440 bytes downloaded
[15:05:19] Initial: B478; + 323421 bytes downloaded
[15:25:19] Verifying core Core_a1.fah...
[15:25:19] Error reading signature from downloaded core file.
[15:25:19] Failed to verify core
[15:25:19] + Error: Could not extract core
[15:25:19] + Core download error (#2), waiting before retry...
[15:25:25] + Downloading new core: FahCore_a1.exe
[15:25:25] Downloading core (/~pande/Win32/x86/Core_a1.fah from www.stanford.edu)
[15:25:25] Initial: AFDE; + 10240 bytes downloaded
[15:25:25] Initial: AD21; + 20480 bytes downloaded
{snip}
[15:25:29] Initial: DD6C; + 788480 bytes downloaded
[15:25:29] Initial: D2E9; + 789667 bytes downloaded
[15:25:29] Verifying core Core_a1.fah...
[15:25:29] Signature is VALID
[15:25:29]
[15:25:29] Trying to unzip core FahCore_a1.exe
[15:25:29] Decompressed FahCore_a1.exe (2035712 bytes) successfully
[15:25:34] + Core successfully engaged
[15:25:34] Deleting current work unit & continuing...
[15:25:34] Using generic mpiexec calls
[15:27:38] - Warning: Could not delete all work unit files (6): Core returned invalid code
[15:27:38] Trying to send all finished work units
[15:27:38] + No unsent completed units remaining.
[15:27:38] - Preparing to get new work unit...
[15:27:38] + Attempting to get work packet
[15:27:38] - Will indicate memory of 3326 MB
[15:27:38] - Connecting to assignment server
[15:27:38] Connecting to http://assign.stanford.edu:8080/
[15:27:38] Posted data.
[15:27:38] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[15:27:38] + News From Folding@Home: Welcome to Folding@Home
[15:27:38] Loaded queue successfully.
[15:27:38] Connecting to http://171.64.65.64:8080/
[15:27:38] Posted data.
[15:27:38] Initial: 0000; - Error: Bad packet type from server, expected work assignment
[15:27:39] - Attempt #1 to get work failed, and no other work to do.
Waiting before retry.
[15:27:56] + Attempting to get work packet
[15:27:56] - Will indicate memory of 3326 MB
[15:27:56] - Connecting to assignment server
[15:27:56] Connecting to http://assign.stanford.edu:8080/
[15:27:56] Posted data.
[15:27:56] Initial: 40AB; - Successful: assigned to (171.64.65.64).
[15:27:56] + News From Folding@Home: Welcome to Folding@Home
[15:27:56] Loaded queue successfully.
[15:27:56] Connecting to http://171.64.65.64:8080/
[15:28:01] Posted data.
[15:28:01] Initial: 0000; - Receiving payload (expected size: 4731304)
[15:28:24] - Downloaded at ~200 kB/s
[15:28:24] - Averaged speed for that direction ~198 kB/s
[15:28:24] + Received work.
[15:28:24] + Closed connections
[15:28:29]
[15:28:29] + Processing work unit
[15:28:29] Work type a1 not eligible for variable processors
[15:28:29] Core required: FahCore_a1.exe
[15:28:29] Core found.
[15:28:29] Using generic mpiexec calls
[15:28:29] Working on queue slot 07 [August 28 15:28:29 UTC]
[15:28:29] + Working ...
[15:28:29] - Calling 'mpiexec -np 4 -channel auto -host 127.0.0.1 FahCore_a1.exe -dir work/ -suffix 07 -checkpoint 15 -verbose -lifeline 3284 -version 622'
[15:28:29]
[15:28:29] *------------------------------*
[15:28:29] Folding@Home Gromacs SMP Core
[15:28:29] Version 1.74 (March 10, 2007)
[15:28:29]
[15:28:29] Preparing to commence simulation
[15:28:29] - Looking at optimizations...
[15:28:29] - Created dyn
[15:28:29] - Files status OK
[15:28:34] - Expanded 4730792 -> 24426905 (decompressed 516.3 percent)
[15:28:34] - Starting from initial work packet
[15:28:34]
[15:28:34] Project: 2665 (Run 3, Clone 277, Gen 45)
[15:28:34]
[15:28:35] Assembly optimizations on if available.
[15:28:35] Entering M.D.
[15:28:56] al work packet
[15:28:56]
[15:28:56] Project: 2665 (Run 3, Clone 277, Gen 45)
[15:28:56]
[15:28:56] 65 (Run 3, Clone 277, Gen 45)
[15:28:56]
[15:28:57] Entering M.D.
[15:29:03] Rejecting checkpoint
[15:29:05] Protein: HGG in water
[15:29:05] Writing local files
[15:29:13] Extra SSE boost OK.
[15:29:13] Writing local files
[15:29:13] Completed 0 out of 250000 steps (0 percent)
[15:44:14] Timered checkpoint triggered.
[15:44:30] Writing local files
[15:44:31] Completed 2500 out of 250000 steps (1 percent)