I want to send this wu back - how?

Moderators: Site Moderators, FAHC Science Team

Post Reply
MuddlinThrough
Posts: 2
Joined: Sat Jun 20, 2020 2:57 pm

I want to send this wu back - how?

Post by MuddlinThrough »

14253 49 3 33

has had many attempts, my computer is tired of trying.
log below is obviously a fraction, I couldn't seem to figure out how to stuff megabytes into the box.....

I have a screencap of FAHControl, but don't see a way to get it into this message

Code: Select all






14:14:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:14:09Z ***********************
14:14:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:14:10:WU02:FS00:0xa7:       Type: 0xa7
14:14:10:WU02:FS00:0xa7:       Core: Gromacs
14:14:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22034 -checkpoint 15 -np
14:14:10:WU02:FS00:0xa7:             10
14:14:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:14:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:14:10:WU02:FS00:0xa7:       Time: 06:06:57
14:14:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:14:10:WU02:FS00:0xa7:     Branch: master
14:14:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:14:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:14:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:14:10:WU02:FS00:0xa7:       Bits: 64
14:14:10:WU02:FS00:0xa7:       Mode: Release
14:14:10:WU02:FS00:0xa7:************************************ System ************************************
14:14:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:14:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:14:10:WU02:FS00:0xa7:       CPUs: 12
14:14:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:14:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:14:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:14:10:WU02:FS00:0xa7: OS Version: 5.3
14:14:10:WU02:FS00:0xa7:Has Battery: false
14:14:10:WU02:FS00:0xa7: On Battery: false
14:14:10:WU02:FS00:0xa7: UTC Offset: -4
14:14:10:WU02:FS00:0xa7:        PID: 22038
14:14:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:14:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:14:10:WU02:FS00:0xa7:    Version: 0.0.18
14:14:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:14:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:14:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:14:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:14:10:WU02:FS00:0xa7:       Time: 06:13:26
14:14:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:14:10:WU02:FS00:0xa7:     Branch: master
14:14:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:14:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:14:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:14:10:WU02:FS00:0xa7:       Bits: 64
14:14:10:WU02:FS00:0xa7:       Mode: Release
14:14:10:WU02:FS00:0xa7:************************************ Build *************************************
14:14:10:WU02:FS00:0xa7:       SIMD: avx_256
14:14:10:WU02:FS00:0xa7:********************************************************************************
14:14:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:14:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:14:10:WU02:FS00:0xa7:Reading tar file core.xml
14:14:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:14:10:WU02:FS00:0xa7:Digital signatures verified
14:14:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:14:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:14:10:WU02:FS00:0xa7:ERROR:
14:14:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:14:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:14:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:14:10:WU02:FS00:0xa7:ERROR:
14:14:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:14:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:14:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:14:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:14:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:14:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:14:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:14:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:14:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:14:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:14:15:WU02:FS00:0xa7:Saving result file md.log
14:14:15:WU02:FS00:0xa7:Saving result file science.log
14:14:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:15:09:WU02:FS00:Starting
14:15:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134309.txt'
14:15:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:15:09:WU02:FS00:Started FahCore on PID 22053
14:15:09:WU02:FS00:Core PID:22057
14:15:09:WU02:FS00:FahCore 0xa7 started
14:15:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:15:09Z ***********************
14:15:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:15:10:WU02:FS00:0xa7:       Type: 0xa7
14:15:10:WU02:FS00:0xa7:       Core: Gromacs
14:15:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22053 -checkpoint 15 -np
14:15:10:WU02:FS00:0xa7:             10
14:15:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:15:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:15:10:WU02:FS00:0xa7:       Time: 06:06:57
14:15:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:15:10:WU02:FS00:0xa7:     Branch: master
14:15:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:15:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:15:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:15:10:WU02:FS00:0xa7:       Bits: 64
14:15:10:WU02:FS00:0xa7:       Mode: Release
14:15:10:WU02:FS00:0xa7:************************************ System ************************************
14:15:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:15:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:15:10:WU02:FS00:0xa7:       CPUs: 12
14:15:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:15:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:15:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:15:10:WU02:FS00:0xa7: OS Version: 5.3
14:15:10:WU02:FS00:0xa7:Has Battery: false
14:15:10:WU02:FS00:0xa7: On Battery: false
14:15:10:WU02:FS00:0xa7: UTC Offset: -4
14:15:10:WU02:FS00:0xa7:        PID: 22057
14:15:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:15:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:15:10:WU02:FS00:0xa7:    Version: 0.0.18
14:15:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:15:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:15:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:15:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:15:10:WU02:FS00:0xa7:       Time: 06:13:26
14:15:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:15:10:WU02:FS00:0xa7:     Branch: master
14:15:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:15:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:15:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:15:10:WU02:FS00:0xa7:       Bits: 64
14:15:10:WU02:FS00:0xa7:       Mode: Release
14:15:10:WU02:FS00:0xa7:************************************ Build *************************************
14:15:10:WU02:FS00:0xa7:       SIMD: avx_256
14:15:10:WU02:FS00:0xa7:********************************************************************************
14:15:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:15:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:15:10:WU02:FS00:0xa7:Reading tar file core.xml
14:15:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:15:10:WU02:FS00:0xa7:Digital signatures verified
14:15:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:15:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:15:10:WU02:FS00:0xa7:ERROR:
14:15:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:15:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:15:10:WU02:FS00:0xa7:ERROR:
14:15:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:15:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:15:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:15:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:15:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:15:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:15:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:15:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:15:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:15:15:WU02:FS00:0xa7:Saving result file md.log
14:15:15:WU02:FS00:0xa7:Saving result file science.log
14:15:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:16:09:WU02:FS00:Starting
14:16:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134409.txt'
14:16:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:16:09:WU02:FS00:Started FahCore on PID 22071
14:16:09:WU02:FS00:Core PID:22075
14:16:09:WU02:FS00:FahCore 0xa7 started
14:16:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:16:09Z ***********************
14:16:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:16:10:WU02:FS00:0xa7:       Type: 0xa7
14:16:10:WU02:FS00:0xa7:       Core: Gromacs
14:16:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22071 -checkpoint 15 -np
14:16:10:WU02:FS00:0xa7:             10
14:16:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:16:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:16:10:WU02:FS00:0xa7:       Time: 06:06:57
14:16:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:16:10:WU02:FS00:0xa7:     Branch: master
14:16:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:16:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:16:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:16:10:WU02:FS00:0xa7:       Bits: 64
14:16:10:WU02:FS00:0xa7:       Mode: Release
14:16:10:WU02:FS00:0xa7:************************************ System ************************************
14:16:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:16:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:16:10:WU02:FS00:0xa7:       CPUs: 12
14:16:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:16:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:16:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:16:10:WU02:FS00:0xa7: OS Version: 5.3
14:16:10:WU02:FS00:0xa7:Has Battery: false
14:16:10:WU02:FS00:0xa7: On Battery: false
14:16:10:WU02:FS00:0xa7: UTC Offset: -4
14:16:10:WU02:FS00:0xa7:        PID: 22075
14:16:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:16:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:16:10:WU02:FS00:0xa7:    Version: 0.0.18
14:16:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:16:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:16:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:16:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:16:10:WU02:FS00:0xa7:       Time: 06:13:26
14:16:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:16:10:WU02:FS00:0xa7:     Branch: master
14:16:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:16:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:16:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:16:10:WU02:FS00:0xa7:       Bits: 64
14:16:10:WU02:FS00:0xa7:       Mode: Release
14:16:10:WU02:FS00:0xa7:************************************ Build *************************************
14:16:10:WU02:FS00:0xa7:       SIMD: avx_256
14:16:10:WU02:FS00:0xa7:********************************************************************************
14:16:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:16:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:16:10:WU02:FS00:0xa7:Reading tar file core.xml
14:16:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:16:10:WU02:FS00:0xa7:Digital signatures verified
14:16:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:16:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:16:10:WU02:FS00:0xa7:ERROR:
14:16:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:16:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:16:10:WU02:FS00:0xa7:ERROR:
14:16:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:16:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:16:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:16:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:16:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:16:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:16:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:16:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:16:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:16:15:WU02:FS00:0xa7:Saving result file md.log
14:16:15:WU02:FS00:0xa7:Saving result file science.log
14:16:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:17:09:WU02:FS00:Starting
14:17:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134509.txt'
14:17:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:17:09:WU02:FS00:Started FahCore on PID 22092
14:17:09:WU02:FS00:Core PID:22096
14:17:09:WU02:FS00:FahCore 0xa7 started
14:17:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:17:09Z ***********************
14:17:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:17:10:WU02:FS00:0xa7:       Type: 0xa7
14:17:10:WU02:FS00:0xa7:       Core: Gromacs
14:17:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22092 -checkpoint 15 -np
14:17:10:WU02:FS00:0xa7:             10
14:17:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:17:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:17:10:WU02:FS00:0xa7:       Time: 06:06:57
14:17:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:17:10:WU02:FS00:0xa7:     Branch: master
14:17:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:17:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:17:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:17:10:WU02:FS00:0xa7:       Bits: 64
14:17:10:WU02:FS00:0xa7:       Mode: Release
14:17:10:WU02:FS00:0xa7:************************************ System ************************************
14:17:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:17:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:17:10:WU02:FS00:0xa7:       CPUs: 12
14:17:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:17:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:17:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:17:10:WU02:FS00:0xa7: OS Version: 5.3
14:17:10:WU02:FS00:0xa7:Has Battery: false
14:17:10:WU02:FS00:0xa7: On Battery: false
14:17:10:WU02:FS00:0xa7: UTC Offset: -4
14:17:10:WU02:FS00:0xa7:        PID: 22096
14:17:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:17:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:17:10:WU02:FS00:0xa7:    Version: 0.0.18
14:17:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:17:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:17:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:17:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:17:10:WU02:FS00:0xa7:       Time: 06:13:26
14:17:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:17:10:WU02:FS00:0xa7:     Branch: master
14:17:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:17:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:17:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:17:10:WU02:FS00:0xa7:       Bits: 64
14:17:10:WU02:FS00:0xa7:       Mode: Release
14:17:10:WU02:FS00:0xa7:************************************ Build *************************************
14:17:10:WU02:FS00:0xa7:       SIMD: avx_256
14:17:10:WU02:FS00:0xa7:********************************************************************************
14:17:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:17:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:17:10:WU02:FS00:0xa7:Reading tar file core.xml
14:17:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:17:10:WU02:FS00:0xa7:Digital signatures verified
14:17:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:17:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:17:10:WU02:FS00:0xa7:ERROR:
14:17:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:17:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:17:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:17:10:WU02:FS00:0xa7:ERROR:
14:17:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:17:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:17:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:17:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:17:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:17:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:17:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:17:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:17:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:17:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:17:15:WU02:FS00:0xa7:Saving result file md.log
14:17:15:WU02:FS00:0xa7:Saving result file science.log
14:17:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:18:09:WU02:FS00:Starting
14:18:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134609.txt'
14:18:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:18:09:WU02:FS00:Started FahCore on PID 22111
14:18:09:WU02:FS00:Core PID:22115
14:18:09:WU02:FS00:FahCore 0xa7 started
14:18:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:18:09Z ***********************
14:18:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:18:10:WU02:FS00:0xa7:       Type: 0xa7
14:18:10:WU02:FS00:0xa7:       Core: Gromacs
14:18:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22111 -checkpoint 15 -np
14:18:10:WU02:FS00:0xa7:             10
14:18:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:18:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:18:10:WU02:FS00:0xa7:       Time: 06:06:57
14:18:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:18:10:WU02:FS00:0xa7:     Branch: master
14:18:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:18:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:18:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:18:10:WU02:FS00:0xa7:       Bits: 64
14:18:10:WU02:FS00:0xa7:       Mode: Release
14:18:10:WU02:FS00:0xa7:************************************ System ************************************
14:18:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:18:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:18:10:WU02:FS00:0xa7:       CPUs: 12
14:18:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:18:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:18:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:18:10:WU02:FS00:0xa7: OS Version: 5.3
14:18:10:WU02:FS00:0xa7:Has Battery: false
14:18:10:WU02:FS00:0xa7: On Battery: false
14:18:10:WU02:FS00:0xa7: UTC Offset: -4
14:18:10:WU02:FS00:0xa7:        PID: 22115
14:18:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:18:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:18:10:WU02:FS00:0xa7:    Version: 0.0.18
14:18:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:18:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:18:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:18:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:18:10:WU02:FS00:0xa7:       Time: 06:13:26
14:18:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:18:10:WU02:FS00:0xa7:     Branch: master
14:18:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:18:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:18:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:18:10:WU02:FS00:0xa7:       Bits: 64
14:18:10:WU02:FS00:0xa7:       Mode: Release
14:18:10:WU02:FS00:0xa7:************************************ Build *************************************
14:18:10:WU02:FS00:0xa7:       SIMD: avx_256
14:18:10:WU02:FS00:0xa7:********************************************************************************
14:18:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:18:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:18:10:WU02:FS00:0xa7:Reading tar file core.xml
14:18:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:18:10:WU02:FS00:0xa7:Digital signatures verified
14:18:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:18:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:18:10:WU02:FS00:0xa7:ERROR:
14:18:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:18:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:18:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:18:10:WU02:FS00:0xa7:ERROR:
14:18:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:18:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:18:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:18:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:18:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:18:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:18:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:18:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:18:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:18:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:18:15:WU02:FS00:0xa7:Saving result file md.log
14:18:15:WU02:FS00:0xa7:Saving result file science.log
14:18:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:19:09:WU02:FS00:Starting
14:19:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134709.txt'
14:19:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:19:09:WU02:FS00:Started FahCore on PID 22129
14:19:09:WU02:FS00:Core PID:22133
14:19:09:WU02:FS00:FahCore 0xa7 started
14:19:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:19:09Z ***********************
14:19:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:19:10:WU02:FS00:0xa7:       Type: 0xa7
14:19:10:WU02:FS00:0xa7:       Core: Gromacs
14:19:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22129 -checkpoint 15 -np
14:19:10:WU02:FS00:0xa7:             10
14:19:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:19:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:19:10:WU02:FS00:0xa7:       Time: 06:06:57
14:19:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:19:10:WU02:FS00:0xa7:     Branch: master
14:19:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:19:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:19:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:19:10:WU02:FS00:0xa7:       Bits: 64
14:19:10:WU02:FS00:0xa7:       Mode: Release
14:19:10:WU02:FS00:0xa7:************************************ System ************************************
14:19:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:19:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:19:10:WU02:FS00:0xa7:       CPUs: 12
14:19:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:19:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:19:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:19:10:WU02:FS00:0xa7: OS Version: 5.3
14:19:10:WU02:FS00:0xa7:Has Battery: false
14:19:10:WU02:FS00:0xa7: On Battery: false
14:19:10:WU02:FS00:0xa7: UTC Offset: -4
14:19:10:WU02:FS00:0xa7:        PID: 22133
14:19:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:19:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:19:10:WU02:FS00:0xa7:    Version: 0.0.18
14:19:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:19:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:19:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:19:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:19:10:WU02:FS00:0xa7:       Time: 06:13:26
14:19:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:19:10:WU02:FS00:0xa7:     Branch: master
14:19:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:19:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:19:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:19:10:WU02:FS00:0xa7:       Bits: 64
14:19:10:WU02:FS00:0xa7:       Mode: Release
14:19:10:WU02:FS00:0xa7:************************************ Build *************************************
14:19:10:WU02:FS00:0xa7:       SIMD: avx_256
14:19:10:WU02:FS00:0xa7:********************************************************************************
14:19:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:19:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:19:10:WU02:FS00:0xa7:Reading tar file core.xml
14:19:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:19:10:WU02:FS00:0xa7:Digital signatures verified
14:19:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:19:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:19:10:WU02:FS00:0xa7:ERROR:
14:19:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:19:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:19:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:19:10:WU02:FS00:0xa7:ERROR:
14:19:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:19:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:19:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:19:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:19:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:19:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:19:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:19:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:19:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:19:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:19:15:WU02:FS00:0xa7:Saving result file md.log
14:19:15:WU02:FS00:0xa7:Saving result file science.log
14:19:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:20:09:WU02:FS00:Starting
14:20:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134809.txt'
14:20:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:20:09:WU02:FS00:Started FahCore on PID 22147
14:20:09:WU02:FS00:Core PID:22151
14:20:09:WU02:FS00:FahCore 0xa7 started
14:20:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:20:09Z ***********************
14:20:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:20:10:WU02:FS00:0xa7:       Type: 0xa7
14:20:10:WU02:FS00:0xa7:       Core: Gromacs
14:20:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22147 -checkpoint 15 -np
14:20:10:WU02:FS00:0xa7:             10
14:20:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:20:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:20:10:WU02:FS00:0xa7:       Time: 06:06:57
14:20:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:20:10:WU02:FS00:0xa7:     Branch: master
14:20:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:20:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:20:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:20:10:WU02:FS00:0xa7:       Bits: 64
14:20:10:WU02:FS00:0xa7:       Mode: Release
14:20:10:WU02:FS00:0xa7:************************************ System ************************************
14:20:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:20:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:20:10:WU02:FS00:0xa7:       CPUs: 12
14:20:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:20:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:20:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:20:10:WU02:FS00:0xa7: OS Version: 5.3
14:20:10:WU02:FS00:0xa7:Has Battery: false
14:20:10:WU02:FS00:0xa7: On Battery: false
14:20:10:WU02:FS00:0xa7: UTC Offset: -4
14:20:10:WU02:FS00:0xa7:        PID: 22151
14:20:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:20:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:20:10:WU02:FS00:0xa7:    Version: 0.0.18
14:20:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:20:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:20:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:20:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:20:10:WU02:FS00:0xa7:       Time: 06:13:26
14:20:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:20:10:WU02:FS00:0xa7:     Branch: master
14:20:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:20:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:20:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:20:10:WU02:FS00:0xa7:       Bits: 64
14:20:10:WU02:FS00:0xa7:       Mode: Release
14:20:10:WU02:FS00:0xa7:************************************ Build *************************************
14:20:10:WU02:FS00:0xa7:       SIMD: avx_256
14:20:10:WU02:FS00:0xa7:********************************************************************************
14:20:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:20:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:20:10:WU02:FS00:0xa7:Reading tar file core.xml
14:20:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:20:10:WU02:FS00:0xa7:Digital signatures verified
14:20:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:20:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:20:10:WU02:FS00:0xa7:ERROR:
14:20:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:20:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:20:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:20:10:WU02:FS00:0xa7:ERROR:
14:20:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:20:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:20:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:20:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:20:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:20:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:20:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:20:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:20:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:20:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:20:15:WU02:FS00:0xa7:Saving result file md.log
14:20:15:WU02:FS00:0xa7:Saving result file science.log
14:20:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:21:09:WU02:FS00:Starting
14:21:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-134909.txt'
14:21:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:21:09:WU02:FS00:Started FahCore on PID 22165
14:21:09:WU02:FS00:Core PID:22169
14:21:09:WU02:FS00:FahCore 0xa7 started
14:21:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:21:09Z ***********************
14:21:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:21:10:WU02:FS00:0xa7:       Type: 0xa7
14:21:10:WU02:FS00:0xa7:       Core: Gromacs
14:21:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22165 -checkpoint 15 -np
14:21:10:WU02:FS00:0xa7:             10
14:21:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:21:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:21:10:WU02:FS00:0xa7:       Time: 06:06:57
14:21:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:21:10:WU02:FS00:0xa7:     Branch: master
14:21:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:21:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:21:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:21:10:WU02:FS00:0xa7:       Bits: 64
14:21:10:WU02:FS00:0xa7:       Mode: Release
14:21:10:WU02:FS00:0xa7:************************************ System ************************************
14:21:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:21:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:21:10:WU02:FS00:0xa7:       CPUs: 12
14:21:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:21:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:21:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:21:10:WU02:FS00:0xa7: OS Version: 5.3
14:21:10:WU02:FS00:0xa7:Has Battery: false
14:21:10:WU02:FS00:0xa7: On Battery: false
14:21:10:WU02:FS00:0xa7: UTC Offset: -4
14:21:10:WU02:FS00:0xa7:        PID: 22169
14:21:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:21:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:21:10:WU02:FS00:0xa7:    Version: 0.0.18
14:21:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:21:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:21:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:21:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:21:10:WU02:FS00:0xa7:       Time: 06:13:26
14:21:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:21:10:WU02:FS00:0xa7:     Branch: master
14:21:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:21:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:21:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:21:10:WU02:FS00:0xa7:       Bits: 64
14:21:10:WU02:FS00:0xa7:       Mode: Release
14:21:10:WU02:FS00:0xa7:************************************ Build *************************************
14:21:10:WU02:FS00:0xa7:       SIMD: avx_256
14:21:10:WU02:FS00:0xa7:********************************************************************************
14:21:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:21:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:21:10:WU02:FS00:0xa7:Reading tar file core.xml
14:21:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:21:10:WU02:FS00:0xa7:Digital signatures verified
14:21:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:21:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:21:10:WU02:FS00:0xa7:ERROR:
14:21:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:21:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:21:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:21:10:WU02:FS00:0xa7:ERROR:
14:21:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:21:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:21:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:21:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:21:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:21:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:21:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:21:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:21:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:21:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:21:15:WU02:FS00:0xa7:Saving result file md.log
14:21:15:WU02:FS00:0xa7:Saving result file science.log
14:21:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:22:09:WU02:FS00:Starting
14:22:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-135009.txt'
14:22:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:22:09:WU02:FS00:Started FahCore on PID 22183
14:22:09:WU02:FS00:Core PID:22187
14:22:09:WU02:FS00:FahCore 0xa7 started
14:22:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:22:09Z ***********************
14:22:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:22:10:WU02:FS00:0xa7:       Type: 0xa7
14:22:10:WU02:FS00:0xa7:       Core: Gromacs
14:22:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22183 -checkpoint 15 -np
14:22:10:WU02:FS00:0xa7:             10
14:22:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:22:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:22:10:WU02:FS00:0xa7:       Time: 06:06:57
14:22:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:22:10:WU02:FS00:0xa7:     Branch: master
14:22:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:22:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:22:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:22:10:WU02:FS00:0xa7:       Bits: 64
14:22:10:WU02:FS00:0xa7:       Mode: Release
14:22:10:WU02:FS00:0xa7:************************************ System ************************************
14:22:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:22:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:22:10:WU02:FS00:0xa7:       CPUs: 12
14:22:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:22:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:22:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:22:10:WU02:FS00:0xa7: OS Version: 5.3
14:22:10:WU02:FS00:0xa7:Has Battery: false
14:22:10:WU02:FS00:0xa7: On Battery: false
14:22:10:WU02:FS00:0xa7: UTC Offset: -4
14:22:10:WU02:FS00:0xa7:        PID: 22187
14:22:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:22:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:22:10:WU02:FS00:0xa7:    Version: 0.0.18
14:22:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:22:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:22:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:22:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:22:10:WU02:FS00:0xa7:       Time: 06:13:26
14:22:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:22:10:WU02:FS00:0xa7:     Branch: master
14:22:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:22:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:22:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:22:10:WU02:FS00:0xa7:       Bits: 64
14:22:10:WU02:FS00:0xa7:       Mode: Release
14:22:10:WU02:FS00:0xa7:************************************ Build *************************************
14:22:10:WU02:FS00:0xa7:       SIMD: avx_256
14:22:10:WU02:FS00:0xa7:********************************************************************************
14:22:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:22:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:22:10:WU02:FS00:0xa7:Reading tar file core.xml
14:22:10:WU02:FS00:0xa7:Reading tar file frame33.tpr
14:22:10:WU02:FS00:0xa7:Digital signatures verified
14:22:10:WU02:FS00:0xa7:Calling: mdrun -s frame33.tpr -o frame33.trr -x frame33.xtc -cpt 15 -nt 10
14:22:10:WU02:FS00:0xa7:Steps: first=8250000 total=250000
14:22:10:WU02:FS00:0xa7:ERROR:
14:22:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:22:10:WU02:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
14:22:10:WU02:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
14:22:10:WU02:FS00:0xa7:ERROR:
14:22:10:WU02:FS00:0xa7:ERROR:Fatal error:
14:22:10:WU02:FS00:0xa7:ERROR:There is no domain decomposition for 10 ranks that is compatible with the given box and a minimum cell size of 1.4227 nm
14:22:10:WU02:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
14:22:10:WU02:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
14:22:10:WU02:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:22:10:WU02:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:22:10:WU02:FS00:0xa7:ERROR:-------------------------------------------------------
14:22:15:WU02:FS00:0xa7:WARNING:Unexpected exit() call
14:22:15:WU02:FS00:0xa7:WARNING:Unexpected exit from science code
14:22:15:WU02:FS00:0xa7:Saving result file ../logfile_01.txt
14:22:15:WU02:FS00:0xa7:Saving result file md.log
14:22:15:WU02:FS00:0xa7:Saving result file science.log
14:22:15:WU02:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:23:09:WU02:FS00:Starting
14:23:09:WU02:FS00:Removing old file 'work/02/logfile_01-20200620-135109.txt'
14:23:09:WU02:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /home/gnb/Folding/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 02 -suffix 01 -version 706 -lifeline 7821 -checkpoint 15 -np 10
14:23:09:WU02:FS00:Started FahCore on PID 22202
14:23:09:WU02:FS00:Core PID:22206
14:23:09:WU02:FS00:FahCore 0xa7 started
14:23:10:WU02:FS00:0xa7:*********************** Log Started 2020-06-20T14:23:09Z ***********************
14:23:10:WU02:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:23:10:WU02:FS00:0xa7:       Type: 0xa7
14:23:10:WU02:FS00:0xa7:       Core: Gromacs
14:23:10:WU02:FS00:0xa7:       Args: -dir 02 -suffix 01 -version 706 -lifeline 22202 -checkpoint 15 -np
14:23:10:WU02:FS00:0xa7:             10
14:23:10:WU02:FS00:0xa7:************************************ CBang *************************************
14:23:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:23:10:WU02:FS00:0xa7:       Time: 06:06:57
14:23:10:WU02:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
14:23:10:WU02:FS00:0xa7:     Branch: master
14:23:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:23:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
14:23:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:23:10:WU02:FS00:0xa7:       Bits: 64
14:23:10:WU02:FS00:0xa7:       Mode: Release
14:23:10:WU02:FS00:0xa7:************************************ System ************************************
14:23:10:WU02:FS00:0xa7:        CPU: AMD Ryzen 5 2600 Six-Core Processor
14:23:10:WU02:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 8 Stepping 2
14:23:10:WU02:FS00:0xa7:       CPUs: 12
14:23:10:WU02:FS00:0xa7:     Memory: 7.78GiB
14:23:10:WU02:FS00:0xa7:Free Memory: 3.83GiB
14:23:10:WU02:FS00:0xa7:    Threads: POSIX_THREADS
14:23:10:WU02:FS00:0xa7: OS Version: 5.3
14:23:10:WU02:FS00:0xa7:Has Battery: false
14:23:10:WU02:FS00:0xa7: On Battery: false
14:23:10:WU02:FS00:0xa7: UTC Offset: -4
14:23:10:WU02:FS00:0xa7:        PID: 22206
14:23:10:WU02:FS00:0xa7:        CWD: /home/gnb/Folding/work
14:23:10:WU02:FS00:0xa7:******************************** Build - libFAH ********************************
14:23:10:WU02:FS00:0xa7:    Version: 0.0.18
14:23:10:WU02:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:23:10:WU02:FS00:0xa7:  Copyright: 2019 foldingathome.org
14:23:10:WU02:FS00:0xa7:   Homepage: https://foldingathome.org/
14:23:10:WU02:FS00:0xa7:       Date: Nov 5 2019
14:23:10:WU02:FS00:0xa7:       Time: 06:13:26
14:23:10:WU02:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
14:23:10:WU02:FS00:0xa7:     Branch: master
14:23:10:WU02:FS00:0xa7:   Compiler: GNU 8.3.0
14:23:10:WU02:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
14:23:10:WU02:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
14:23:10:WU02:FS00:0xa7:       Bits: 64
14:23:10:WU02:FS00:0xa7:       Mode: Release
14:23:10:WU02:FS00:0xa7:************************************ Build *************************************
14:23:10:WU02:FS00:0xa7:       SIMD: avx_256
14:23:10:WU02:FS00:0xa7:********************************************************************************
14:23:10:WU02:FS00:0xa7:Project: 14523 (Run 49, Clone 3, Gen 33)
14:23:10:WU02:FS00:0xa7:Unit: 0x0000002e80fccb0a5e781d38ea81695b
14:23:10:WU02:FS00:0xa7:Reading tar file core.xml
Top
Joe_H
Site Admin
Posts: 7929
Joined: Tue Apr 21, 2009 4:41 pm
Hardware configuration: Mac Pro 2.8 quad 12 GB smp4
MacBook Pro 2.9 i7 8 GB smp2
Location: W. MA

Re: I want to send this wu back - how?

Post by Joe_H »

Try changing the CPU thread count, this WU is not able to process on 10 threads. I would suggest 8 or 9. Moving the slider to Light should change to 6 threads, possibly 5 if you also have a GPU usable for folding.

To change the thread count using FAHControl, click on Configure and then select the Slots tab. Then click on the CPU slot to select it, and then Edit. Changing the default setting of '-1' in the CPU thread setting to a number from 1 to the maximum number of Threads supported by your processor will change that from being under the control of the software and the slider. Then Okay the change and Save it.
Image

iMac 2.8 i7 12 GB smp8, Mac Pro 2.8 quad 12 GB smp6
MacBook Pro 2.9 i7 8 GB smp3
Top
MuddlinThrough
Posts: 2
Joined: Sat Jun 20, 2020 2:57 pm

Re: I want to send this wu back - how?

Post by MuddlinThrough »

Never mind. When the GPUs finish, and I reduce the heat level in the room, there will be no 487th atempt at that WU.
Top
Joe_H
Site Admin
Posts: 7929
Joined: Tue Apr 21, 2009 4:41 pm
Hardware configuration: Mac Pro 2.8 quad 12 GB smp4
MacBook Pro 2.9 i7 8 GB smp2
Location: W. MA

Re: I want to send this wu back - how?

Post by Joe_H »

When was the WU downloaded? They try to avoid bad CPU thread settings, and the one for this project may already have been fixed.
Image

iMac 2.8 i7 12 GB smp8, Mac Pro 2.8 quad 12 GB smp6
MacBook Pro 2.9 i7 8 GB smp3
Top
TPL
Posts: 103
Joined: Sun Apr 19, 2020 11:37 am

Re: I want to send this wu back - how?

Post by TPL »

If you want to dump it, pause that slot, go to var/lib/fahclient/work and delete folder 02. Then start slot again.
Top
codecaine
Posts: 17
Joined: Sun Mar 15, 2020 1:35 am

Re: I want to send this wu back - how?

Post by codecaine »

I feel like dumping the WU should be a feature of the interface. Is this in the feature request for the app?
Top
Joe_H
Site Admin
Posts: 7929
Joined: Tue Apr 21, 2009 4:41 pm
Hardware configuration: Mac Pro 2.8 quad 12 GB smp4
MacBook Pro 2.9 i7 8 GB smp2
Location: W. MA

Re: I want to send this wu back - how?

Post by Joe_H »

codecaine wrote:I feel like dumping the WU should be a feature of the interface. Is this in the feature request for the app?
There is a command to use that will dump a WU, not the easiest to use. As far as being a "feature", they have had enough problems with cherrypicking that I doubt it will ever be added to the interface.
Image

iMac 2.8 i7 12 GB smp8, Mac Pro 2.8 quad 12 GB smp6
MacBook Pro 2.9 i7 8 GB smp3
Top
uyaem
Posts: 219
Joined: Sat Mar 21, 2020 7:35 pm
Location: Esslingen, Germany

Re: I want to send this wu back - how?

Post by uyaem »

Joe_H wrote:
codecaine wrote:I feel like dumping the WU should be a feature of the interface. Is this in the feature request for the app?
There is a command to use that will dump a WU, not the easiest to use. As far as being a "feature", they have had enough problems with cherrypicking that I doubt it will ever be added to the interface.
For this reason, I hope the same...
When I read about this in another thread, I find it very sad to see that points seem to be more important to some than the actual science.
Image
CPU: Ryzen 9 3900X (1x21 CPUs) ~ GPU: nVidia GeForce GTX 1660 Super (Asus)
Top
bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: I want to send this wu back - how?

Post by bruce »

uyaem wrote:When I read about this in another thread, I find it very sad to see that points seem to be more important to some than the actual science.
I do understand how you feel. I also understand how they feel.

As the expression goes: "You can catch more flies with honey than with vinegar."

Sometimes I feel very sad when I hear somebody from the opposite political party expressing their opinions about very important political considerations. I don't feel that it's my place to tell them how sad I feel nor is it my place to tell them how wrong they are (IMHO) about the political situation. People from the opposite political party are entitled to their opinion. In fact, most of them are sincere in their beliefs even though I'd be happy to tell them how absolutely wrong they are (IMHO). I have to remember what the H means in that internet shorthand.

I don't think you will catch me making strong statements about science vs. points -- even if you somehow manage to figure out how I REALLY feel about both of them.
Top
Post Reply

Return to “Issues with a specific WU”