14088 BAD_WORK_UNIT

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verdeva
Posts: 30
Joined: Mon Dec 03, 2007 1:40 pm
Location: Seattle, WA

14088 BAD_WORK_UNIT

Post by verdeva »

I have sent several of these units back. Looks like these are not compatible with a 16 core processor.

Code: Select all

08:33:10:WU00:FS01:0xa7:Completed 123750 out of 125000 steps (99%)
08:33:11:WU01:FS01:Connecting to 65.254.110.245:8080
08:33:11:WU01:FS01:Assigned to work server 155.247.166.219
08:33:11:WU01:FS01:Requesting new work unit for slot 01: RUNNING cpu:16 from 155.247.166.219
08:33:11:WU01:FS01:Connecting to 155.247.166.219:8080
08:33:12:WU01:FS01:Downloading 1.24MiB
08:33:13:WU01:FS01:Download complete
08:33:13:WU01:FS01:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:14088 run:14 clone:2 gen:0 core:0xa7 unit:0x000000000002894b5d92495894ae3e8a
08:34:29:WU00:FS01:0xa7:Completed 125000 out of 125000 steps (100%)
08:34:38:WU00:FS01:0xa7:Saving result file ..\logfile_01.txt
08:34:38:WU00:FS01:0xa7:Saving result file frame8.trr
08:34:38:WU00:FS01:0xa7:Saving result file frame8.xtc
08:34:38:WU00:FS01:0xa7:Saving result file md.log
08:34:38:WU00:FS01:0xa7:Saving result file science.log
08:34:38:WU00:FS01:0xa7:Folding@home Core Shutdown: FINISHED_UNIT
08:34:38:WU00:FS01:FahCore returned: FINISHED_UNIT (100 = 0x64)
08:34:38:WU00:FS01:Sending unit results: id:00 state:SEND error:NO_ERROR project:13828 run:779 clone:2 gen:8 core:0xa7 unit:0x0000000980fccb095d657f14a7a44ba6
08:34:38:WU00:FS01:Uploading 11.23MiB to 128.252.203.9
08:34:38:WU01:FS01:Starting
08:34:38:WU00:FS01:Connecting to 128.252.203.9:8080
08:34:38:WU01:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:/ProgramData/FAHClient/cores/cores.foldingathome.org/Win32/x86/Core_a7.fah/FahCore_a7.exe -dir 01 -suffix 01 -version 704 -lifeline 2724 -checkpoint 15 -np 16
08:34:38:WU01:FS01:Started FahCore on PID 6096
08:34:38:WU01:FS01:Core PID:5128
08:34:38:WU01:FS01:FahCore 0xa7 started
08:34:39:WU01:FS01:0xa7:*********************** Log Started 2019-10-04T08:34:38Z ***********************
08:34:39:WU01:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
08:34:39:WU01:FS01:0xa7:       Type: 0xa7
08:34:39:WU01:FS01:0xa7:       Core: Gromacs
08:34:39:WU01:FS01:0xa7:    Website: https://foldingathome.org/
08:34:39:WU01:FS01:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
08:34:39:WU01:FS01:0xa7:     Author: Joseph Coffland <[email protected]>
08:34:39:WU01:FS01:0xa7:       Args: -dir 01 -suffix 01 -version 704 -lifeline 6096 -checkpoint 15 -np
08:34:39:WU01:FS01:0xa7:             16
08:34:39:WU01:FS01:0xa7:     Config: <none>
08:34:39:WU01:FS01:0xa7:************************************ Build *************************************
08:34:39:WU01:FS01:0xa7:    Version: 0.0.17
08:34:39:WU01:FS01:0xa7:       Date: Apr 25 2018
08:34:39:WU01:FS01:0xa7:       Time: 11:02:26
08:34:39:WU01:FS01:0xa7: Repository: Git
08:34:39:WU01:FS01:0xa7:   Revision: fd11abfb405c921e66db1226933e9dd2d18d2acc
08:34:39:WU01:FS01:0xa7:     Branch: master
08:34:39:WU01:FS01:0xa7:   Compiler: Visual C++ 2008
08:34:39:WU01:FS01:0xa7:    Options: /TP /nologo /EHa /wd4297 /wd4103 /Ox /MT
08:34:39:WU01:FS01:0xa7:   Platform: win32 10
08:34:39:WU01:FS01:0xa7:       Bits: 32
08:34:39:WU01:FS01:0xa7:       Mode: Release
08:34:39:WU01:FS01:0xa7:       SIMD: sse2
08:34:39:WU01:FS01:0xa7:************************************ System ************************************
08:34:39:WU01:FS01:0xa7:        CPU: Unknown
08:34:39:WU01:FS01:0xa7:     CPU ID: 
08:34:39:WU01:FS01:0xa7:       CPUs: 16
08:34:39:WU01:FS01:0xa7:     Memory: 15.95GiB
08:34:39:WU01:FS01:0xa7:Free Memory: 12.70GiB
08:34:39:WU01:FS01:0xa7:    Threads: WINDOWS_THREADS
08:34:39:WU01:FS01:0xa7: OS Version: 6.1
08:34:39:WU01:FS01:0xa7:Has Battery: false
08:34:39:WU01:FS01:0xa7: On Battery: false
08:34:39:WU01:FS01:0xa7: UTC Offset: -7
08:34:39:WU01:FS01:0xa7:        PID: 5128
08:34:39:WU01:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
08:34:39:WU01:FS01:0xa7:         OS: Windows 7 Home Premium
08:34:39:WU01:FS01:0xa7:    OS Arch: AMD64
08:34:39:WU01:FS01:0xa7:********************************************************************************
08:34:39:WU01:FS01:0xa7:Project: 14088 (Run 14, Clone 2, Gen 0)
08:34:39:WU01:FS01:0xa7:Unit: 0x000000000002894b5d92495894ae3e8a
08:34:39:WU01:FS01:0xa7:Reading tar file core.xml
08:34:39:WU01:FS01:0xa7:Reading tar file frame0.tpr
08:34:39:WU01:FS01:0xa7:Digital signatures verified
08:34:39:WU01:FS01:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 16
08:34:39:WU01:FS01:0xa7:Steps: first=0 total=1250000
08:34:39:WU01:FS01:0xa7:ERROR:
08:34:39:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
08:34:39:WU01:FS01:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
08:34:39:WU01:FS01:0xa7:ERROR:Source code file: C:\build\fah\windows-10-32bit-core-a7-sse-release\windows-10-32bit-core-a7-sse-release\gromacs-core\build\gromacs\src\gromacs\mdlib\domdec.c, line: 6902
08:34:39:WU01:FS01:0xa7:ERROR:
08:34:39:WU01:FS01:0xa7:ERROR:Fatal error:
08:34:39:WU01:FS01:0xa7:ERROR:There is no domain decomposition for 16 ranks that is compatible with the given box and a minimum cell size of 1.9986 nm
08:34:39:WU01:FS01:0xa7:ERROR:Change the number of ranks or mdrun option -rdd or -dds
08:34:39:WU01:FS01:0xa7:ERROR:Look in the log file for details on the domain decomposition
08:34:39:WU01:FS01:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
08:34:39:WU01:FS01:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
08:34:39:WU01:FS01:0xa7:ERROR:-------------------------------------------------------
08:34:44:WU00:FS01:Upload 9.46%
08:34:44:WU01:FS01:0xa7:WARNING:Unexpected exit() call
08:34:44:WU01:FS01:0xa7:WARNING:Unexpected exit from science code
08:34:44:WU01:FS01:0xa7:Saving result file ..\logfile_01.txt
08:34:44:WU01:FS01:0xa7:Saving result file md.log
08:34:44:WU01:FS01:0xa7:Saving result file science.log
08:34:44:WU01:FS01:0xa7:WARNING:While cleaning up: Failed to remove directory '01': boost::filesystem::remove: The process cannot access the file because it is being used by another process: "01\md.log"
08:34:44:WU01:FS01:0xa7:Folding@home Core Shutdown: BAD_WORK_UNIT
08:34:44:WARNING:WU01:FS01:FahCore returned: BAD_WORK_UNIT (114 = 0x72)
08:34:44:WU01:FS01:Sending unit results: id:01 state:SEND error:FAULTY project:14088 run:14 clone:2 gen:0 core:0xa7 unit:0x000000000002894b5d92495894ae3e8a
08:34:44:WU01:FS01:Uploading 22.50KiB to 155.247.166.219
08:34:44:WU01:FS01:Connecting to 155.247.166.219:8080
08:34:45:WU02:FS01:Connecting to 65.254.110.245:8080
08:34:45:WU02:FS01:Assigned to work server 128.252.203.9
08:34:45:WU02:FS01:Requesting new work unit for slot 01: READY cpu:16 from 128.252.203.9
08:34:45:WU02:FS01:Connecting to 128.252.203.9:8080
08:34:45:WU01:FS01:Upload complete
08:34:45:WU01:FS01:Server responded WORK_ACK (400)
08:34:45:WU01:FS01:Cleaning up
08:34:45:WU02:FS01:Downloading 8.14MiB
08:34:47:WU02:FS01:Download complete
08:34:47:WU02:FS01:Received Unit: id:02 state:DOWNLOAD error:NO_ERROR project:13829 run:64 clone:2 gen:9 core:0xa7 unit:0x0000000a80fccb095d66d4bf1717cfaf
08:34:47:WU02:FS01:Starting
08:34:47:WU02:FS01:Running FahCore: "C:\Program Files (x86)\FAHClient/FAHCoreWrapper.exe" C:/ProgramData/FAHClient/cores/cores.foldingathome.org/Win32/x86/Core_a7.fah/FahCore_a7.exe -dir 02 -suffix 01 -version 704 -lifeline 2724 -checkpoint 15 -np 16
08:34:47:WU02:FS01:Started FahCore on PID 2148
08:34:47:WU02:FS01:Core PID:5912
08:34:47:WU02:FS01:FahCore 0xa7 started
08:34:48:WU02:FS01:0xa7:*********************** Log Started 2019-10-04T08:34:47Z ***********************
08:34:48:WU02:FS01:0xa7:************************** Gromacs Folding@home Core ***************************
08:34:48:WU02:FS01:0xa7:       Type: 0xa7
08:34:48:WU02:FS01:0xa7:       Core: Gromacs
08:34:48:WU02:FS01:0xa7:    Website: https://foldingathome.org/
08:34:48:WU02:FS01:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
08:34:48:WU02:FS01:0xa7:     Author: Joseph Coffland <[email protected]>
08:34:48:WU02:FS01:0xa7:       Args: -dir 02 -suffix 01 -version 704 -lifeline 2148 -checkpoint 15 -np
08:34:48:WU02:FS01:0xa7:             16
08:34:48:WU02:FS01:0xa7:     Config: <none>
08:34:48:WU02:FS01:0xa7:************************************ Build *************************************
08:34:48:WU02:FS01:0xa7:    Version: 0.0.17
08:34:48:WU02:FS01:0xa7:       Date: Apr 25 2018
08:34:48:WU02:FS01:0xa7:       Time: 11:02:26
08:34:48:WU02:FS01:0xa7: Repository: Git
08:34:48:WU02:FS01:0xa7:   Revision: fd11abfb405c921e66db1226933e9dd2d18d2acc
08:34:48:WU02:FS01:0xa7:     Branch: master
08:34:48:WU02:FS01:0xa7:   Compiler: Visual C++ 2008
08:34:48:WU02:FS01:0xa7:    Options: /TP /nologo /EHa /wd4297 /wd4103 /Ox /MT
08:34:48:WU02:FS01:0xa7:   Platform: win32 10
08:34:48:WU02:FS01:0xa7:       Bits: 32
08:34:48:WU02:FS01:0xa7:       Mode: Release
08:34:48:WU02:FS01:0xa7:       SIMD: sse2
08:34:48:WU02:FS01:0xa7:************************************ System ************************************
08:34:48:WU02:FS01:0xa7:        CPU: Unknown
08:34:48:WU02:FS01:0xa7:     CPU ID: 
08:34:48:WU02:FS01:0xa7:       CPUs: 16
08:34:48:WU02:FS01:0xa7:     Memory: 15.95GiB
08:34:48:WU02:FS01:0xa7:Free Memory: 12.70GiB
08:34:48:WU02:FS01:0xa7:    Threads: WINDOWS_THREADS
08:34:48:WU02:FS01:0xa7: OS Version: 6.1
08:34:48:WU02:FS01:0xa7:Has Battery: false
08:34:48:WU02:FS01:0xa7: On Battery: false
08:34:48:WU02:FS01:0xa7: UTC Offset: -7
08:34:48:WU02:FS01:0xa7:        PID: 5912
08:34:48:WU02:FS01:0xa7:        CWD: C:\ProgramData\FAHClient\work
08:34:48:WU02:FS01:0xa7:         OS: Windows 7 Home Premium
08:34:48:WU02:FS01:0xa7:    OS Arch: AMD64
08:34:48:WU02:FS01:0xa7:********************************************************************************
08:34:48:WU02:FS01:0xa7:Project: 13829 (Run 64, Clone 2, Gen 9)
08:34:48:WU02:FS01:0xa7:Unit: 0x0000000a80fccb095d66d4bf1717cfaf
08:34:48:WU02:FS01:0xa7:Reading tar file core.xml
08:34:48:WU02:FS01:0xa7:Reading tar file frame9.tpr
08:34:48:WU02:FS01:0xa7:Digital signatures verified
08:34:48:WU02:FS01:0xa7:Calling: mdrun -s frame9.tpr -o frame9.trr -x frame9.xtc -cpt 15 -nt 16
08:34:48:WU02:FS01:0xa7:Steps: first=1125000 total=125000
08:34:50:WU00:FS01:Upload 20.03%
08:34:53:WU02:FS01:0xa7:Completed 1 out of 125000 steps (0%)
Top
bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: 14088 BAD_WORK_UNIT

Post by bruce »

Checking with the project's owner...

(I don't have any way to tell which other projects (if any) can support 16 CPUs.)
Did the Project: 13829 that was downloaded next run with 16?
Top
Frisa
Posts: 26
Joined: Fri Jan 18, 2019 6:34 am

Re: 14088 BAD_WORK_UNIT

Post by Frisa »

it seems 14088 and 14089 began assign to client again, i got totally 4 WUs including last time, all 4 are bad WU
it seems not the single WU but the entire project(14088 14089) are completely bad

Code: Select all

23:54:26:WU01:FS00:0xa7:Project: 14088 (Run 154, Clone 0, Gen 0)
23:54:26:WU01:FS00:0xa7:Unit: 0x000000010002894b5d9248ff15fc3126
23:54:26:WU01:FS00:0xa7:Digital signatures verified
23:54:26:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 8
23:54:26:WU01:FS00:0xa7:Steps: first=0 total=1250000
23:54:26:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
23:54:26:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
Top
Frisa
Posts: 26
Joined: Fri Jan 18, 2019 6:34 am

Re: 14088 BAD_WORK_UNIT

Post by Frisa »

BTW how to dump this WU properly? im stuck in interrupted indefinitely
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toTOW
Site Moderator
Posts: 6349
Joined: Sun Dec 02, 2007 10:38 am
Location: Bordeaux, France
Contact:
Contact toTOW

Re: 14088 BAD_WORK_UNIT

Post by toTOW »

Project owner has been notified and project should not be assigning anymore.

Frisa> Pause slot, go to /work your FAH data folder, delete the subfolder with the same number as your slot number. Resume slot.
Image

Folding@Home beta tester since 2002. Folding Forum moderator since July 2008.
Top
Frisa
Posts: 26
Joined: Fri Jan 18, 2019 6:34 am

Re: 14088 BAD_WORK_UNIT

Post by Frisa »

toTOW wrote:Project owner has been notified and project should not be assigning anymore.

Frisa> Pause slot, go to /work your FAH data folder, delete the subfolder with the same number as your slot number. Resume slot.
thank you!
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Frisa
Posts: 26
Joined: Fri Jan 18, 2019 6:34 am

Re: 14088 BAD_WORK_UNIT

Post by Frisa »

it seems this project gonna assigned again (its 3rd time!!!) and not surprisingly, it still got interrupted
id recommend completely pull out this project from FAH and thoroughly tested before releasing again

Code: Select all

15:00:54:WU01:FS00:0xa7:*********************** Log Started 2019-10-06T15:00:53Z ***********************
15:00:54:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
15:00:54:WU01:FS00:0xa7:       Type: 0xa7
15:00:54:WU01:FS00:0xa7:       Core: Gromacs
15:00:54:WU01:FS00:0xa7:    Website: https://foldingathome.org/
15:00:54:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
15:00:54:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
15:00:54:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 1863 -checkpoint 15 -np 8
15:00:54:WU01:FS00:0xa7:     Config: <none>
15:00:54:WU01:FS00:0xa7:************************************ Build *************************************
15:00:54:WU01:FS00:0xa7:    Version: 0.0.17
15:00:54:WU01:FS00:0xa7:       Date: Apr 27 2018
15:00:54:WU01:FS00:0xa7:       Time: 19:09:21
15:00:54:WU01:FS00:0xa7: Repository: Git
15:00:54:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
15:00:54:WU01:FS00:0xa7:     Branch: master
15:00:54:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
15:00:54:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
15:00:54:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
15:00:54:WU01:FS00:0xa7:       Bits: 64
15:00:54:WU01:FS00:0xa7:       Mode: Release
15:00:54:WU01:FS00:0xa7:       SIMD: avx_256
15:00:54:WU01:FS00:0xa7:************************************ System ************************************
15:00:54:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4790K CPU @ 4.00GHz
15:00:54:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 60 Stepping 3
15:00:54:WU01:FS00:0xa7:       CPUs: 8
15:00:54:WU01:FS00:0xa7:     Memory: 3.77GiB
15:00:54:WU01:FS00:0xa7:Free Memory: 3.42GiB
15:00:54:WU01:FS00:0xa7:    Threads: POSIX_THREADS
15:00:54:WU01:FS00:0xa7: OS Version: 4.19
15:00:54:WU01:FS00:0xa7:Has Battery: false
15:00:54:WU01:FS00:0xa7: On Battery: false
15:00:54:WU01:FS00:0xa7: UTC Offset: 8
15:00:54:WU01:FS00:0xa7:        PID: 1867
15:00:54:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
15:00:54:WU01:FS00:0xa7:         OS: Linux 4.19.0-6-amd64 x86_64
15:00:54:WU01:FS00:0xa7:    OS Arch: AMD64
15:00:54:WU01:FS00:0xa7:********************************************************************************
15:00:54:WU01:FS00:0xa7:Project: 14088 (Run 40, Clone 4, Gen 0)
15:00:54:WU01:FS00:0xa7:Unit: 0x000000030002894b5d924947a47d0142
15:00:54:WU01:FS00:0xa7:Digital signatures verified
15:00:54:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 8
15:00:54:WU01:FS00:0xa7:Steps: first=0 total=1250000
15:00:54:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
15:00:54:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
Top
parkut
Posts: 363
Joined: Tue Feb 12, 2008 7:33 am
Hardware configuration: Running exclusively Linux headless blades. All are dedicated crunching machines.
Location: SE Michigan, USA

14088 (Run 153, Clone 3, Gen 0) Fatal Error

Post by parkut »

Folding@home WU Status shows faulty returns (Faulty or Faulty2)

Ubuntu Linux 18.04
Model Name: Intel(R) Core(TM) i7-3770 CPU @ 3.40GHz
Core 0: +32C Core 1: +25C Core 2: +25C Core 3: +25C
Memory: 3.56GiB
Client Version: 7.5.1

Code: Select all

14:15:38:WU00:FS00:0xa7:Project: 14088 (Run 153, Clone 3, Gen 0)
14:15:38:WU00:FS00:0xa7:Unit: 0x000000010002894b5d9248ff34f56d73
14:15:38:WU00:FS00:0xa7:Digital signatures verified
14:15:38:WU00:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 6
14:15:38:WU00:FS00:0xa7:Steps: first=0 total=1250000
14:15:38:WU00:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
14:15:38:WU00:FS00:0xa7:ERROR:
14:15:38:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:38:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:15:38:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:15:38:WU00:FS00:0xa7:ERROR:
14:15:38:WU00:FS00:0xa7:ERROR:Fatal error:
14:15:38:WU00:FS00:0xa7:ERROR:4 particles communicated to PME rank 2 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:15:38:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:15:38:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:15:38:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:15:38:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:43:WU00:FS00:0xa7:ERROR:
14:15:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:15:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:15:43:WU00:FS00:0xa7:ERROR:
14:15:43:WU00:FS00:0xa7:ERROR:Fatal error:
14:15:43:WU00:FS00:0xa7:ERROR:7739 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:15:43:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:15:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:15:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:15:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:43:WU00:FS00:0xa7:ERROR:
14:15:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:15:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:15:43:WU00:FS00:0xa7:ERROR:
14:15:43:WU00:FS00:0xa7:ERROR:Fatal error:
14:15:43:WU00:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:15:43:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:15:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:15:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:15:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:43:WU00:FS00:0xa7:ERROR:
14:15:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:15:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:15:43:WU00:FS00:0xa7:ERROR:
14:15:43:WU00:FS00:0xa7:ERROR:Fatal error:
14:15:43:WU00:FS00:0xa7:ERROR:7818 particles communicated to PME rank 2 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:15:43:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:15:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:15:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:15:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:15:48:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
14:16:37:WU00:FS00:Starting
14:16:37:WU00:FS00:Removing old file './work/00/logfile_01-20191006-134437.txt'
14:16:37:WU00:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 00 -suffix 01 -version 705 -lifeline 1233 -checkpoint 15 -np 6
14:16:37:WU00:FS00:Started FahCore on PID 10067
14:16:37:WU00:FS00:Core PID:10071
14:16:37:WU00:FS00:FahCore 0xa7 started
14:16:38:WU00:FS00:0xa7:*********************** Log Started 2019-10-06T14:16:37Z ***********************
14:16:38:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:16:38:WU00:FS00:0xa7:       Type: 0xa7
14:16:38:WU00:FS00:0xa7:       Core: Gromacs
14:16:38:WU00:FS00:0xa7:    Website: https://foldingathome.org/
14:16:38:WU00:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
14:16:38:WU00:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:16:38:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 10067 -checkpoint 15 -np
14:16:38:WU00:FS00:0xa7:             6
14:16:38:WU00:FS00:0xa7:     Config: <none>
14:16:38:WU00:FS00:0xa7:************************************ Build *************************************
14:16:38:WU00:FS00:0xa7:    Version: 0.0.17
14:16:38:WU00:FS00:0xa7:       Date: Apr 27 2018
14:16:38:WU00:FS00:0xa7:       Time: 19:09:21
14:16:38:WU00:FS00:0xa7: Repository: Git
14:16:38:WU00:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
14:16:38:WU00:FS00:0xa7:     Branch: master
14:16:38:WU00:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
14:16:38:WU00:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
14:16:38:WU00:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
14:16:38:WU00:FS00:0xa7:       Bits: 64
14:16:38:WU00:FS00:0xa7:       Mode: Release
14:16:38:WU00:FS00:0xa7:       SIMD: avx_256
14:16:38:WU00:FS00:0xa7:************************************ System ************************************
14:16:38:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-3770 CPU @ 3.40GHz
14:16:38:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 58 Stepping 9
14:16:38:WU00:FS00:0xa7:       CPUs: 8
14:16:38:WU00:FS00:0xa7:     Memory: 3.56GiB
14:16:38:WU00:FS00:0xa7:Free Memory: 1.71GiB
14:16:38:WU00:FS00:0xa7:    Threads: POSIX_THREADS
14:16:38:WU00:FS00:0xa7: OS Version: 4.15
14:16:38:WU00:FS00:0xa7:Has Battery: false
14:16:38:WU00:FS00:0xa7: On Battery: false
14:16:38:WU00:FS00:0xa7: UTC Offset: -4
14:16:38:WU00:FS00:0xa7:        PID: 10071
14:16:38:WU00:FS00:0xa7:        CWD: /var/lib/fahclient/work
14:16:38:WU00:FS00:0xa7:         OS: Linux 4.15.0-20-generic x86_64
14:16:38:WU00:FS00:0xa7:    OS Arch: AMD64
14:16:38:WU00:FS00:0xa7:********************************************************************************
14:16:38:WU00:FS00:0xa7:Project: 14088 (Run 153, Clone 3, Gen 0)
14:16:38:WU00:FS00:0xa7:Unit: 0x000000010002894b5d9248ff34f56d73
14:16:38:WU00:FS00:0xa7:Digital signatures verified
14:16:38:WU00:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 6
14:16:38:WU00:FS00:0xa7:Steps: first=0 total=1250000
14:16:38:WU00:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
14:16:38:WU00:FS00:0xa7:ERROR:
14:16:38:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:38:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:16:38:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:16:38:WU00:FS00:0xa7:ERROR:
14:16:38:WU00:FS00:0xa7:ERROR:Fatal error:
14:16:38:WU00:FS00:0xa7:ERROR:4 particles communicated to PME rank 2 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:16:38:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:16:38:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:16:38:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:16:38:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:43:WU00:FS00:0xa7:ERROR:
14:16:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:16:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:16:43:WU00:FS00:0xa7:ERROR:
14:16:43:WU00:FS00:0xa7:ERROR:Fatal error:
14:16:43:WU00:FS00:0xa7:ERROR:7739 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:16:43:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:16:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:16:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:16:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:43:WU00:FS00:0xa7:ERROR:
14:16:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:16:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:16:43:WU00:FS00:0xa7:ERROR:
14:16:43:WU00:FS00:0xa7:ERROR:Fatal error:
14:16:43:WU00:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:16:43:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:16:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:16:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:16:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:43:WU00:FS00:0xa7:ERROR:
14:16:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:43:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:16:43:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:16:43:WU00:FS00:0xa7:ERROR:
14:16:43:WU00:FS00:0xa7:ERROR:Fatal error:
14:16:43:WU00:FS00:0xa7:ERROR:7818 particles communicated to PME rank 2 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:16:43:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:16:43:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:16:43:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:16:43:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
14:16:48:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
Top
bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: 14088 BAD_WORK_UNIT

Post by bruce »

toTOW wrote:Frisa> Pause slot, go to /work your FAH data folder, delete the subfolder with the same number as your slot number. Resume slot.
NO.

It's not the slot number, it the Work Queue number. In FAHControl + Status it's number in the bottom half of the middle panel, not the top half.
Top
goodyca
Posts: 187
Joined: Sun Dec 02, 2007 12:36 pm

Re: 14088 BAD_WORK_UNIT

Post by goodyca »

toTOW wrote:Project owner has been notified and project should not be assigning anymore.
I thought you said project 14088 wouldn't be assigned anymore. I got another one this morning and it is bad.

Code: Select all

*********************** Log Started 2019-10-05T18:30:52Z ***********************
18:30:52:************************* Folding@home Client *************************
18:30:52:      Website: https://foldingathome.org/
18:30:52:    Copyright: (c) 2009-2018 foldingathome.org
18:30:52:       Author: Joseph Coffland <[email protected]>
18:30:52:         Args: --child --lifeline 1682 /etc/fahclient/config.xml --run-as
18:30:52:               fahclient --pid-file=/var/run/fahclient.pid --daemon
18:30:52:       Config: /etc/fahclient/config.xml
18:30:52:******************************** Build ********************************
18:30:52:      Version: 7.5.1
18:30:52:         Date: May 12 2018
18:30:52:         Time: 22:51:07
18:30:52:   Repository: Git
18:30:52:     Revision: 4705bf53c635f88b8fe85af7675557e15d491ff0
18:30:52:       Branch: master
18:30:52:     Compiler: GNU 4.4.7 20120313 (Red Hat 4.4.7-18)
18:30:52:      Options: -std=gnu++98 -O3 -funroll-loops
18:30:52:     Platform: linux2 4.14.0-3-amd64
18:30:52:         Bits: 64
18:30:52:         Mode: Release
18:30:52:******************************* System ********************************
18:30:52:          CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
18:30:52:       CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
18:30:52:         CPUs: 12
18:30:52:       Memory: 15.60GiB
18:30:52:  Free Memory: 14.82GiB
18:30:52:      Threads: POSIX_THREADS
18:30:52:   OS Version: 5.2
18:30:52:  Has Battery: false
18:30:52:   On Battery: false
18:30:52:   UTC Offset: -5
18:30:52:          PID: 1684
18:30:52:          CWD: /var/lib/fahclient
18:30:52:           OS: Linux 5.2.17-200.fc30.x86_64 x86_64
18:30:52:      OS Arch: AMD64
18:30:52:         GPUs: 0
18:30:52:CUDA Device 0: Platform:0 Device:0 Bus:1 Slot:0 Compute:3.5 Driver:10.1
18:30:52:       OpenCL: Not detected: Failed to open dynamic library 'libOpenCL.so':
18:30:52:               libOpenCL.so: cannot open shared object file: No such file or
18:30:52:               directory
18:30:52:***********************************************************************
18:30:52:<config>
18:30:52:  <!-- Folding Slot Configuration -->
18:30:52:  <gpu v='false'/>
18:30:52:
18:30:52:  <!-- HTTP Server -->
18:30:52:  <allow v='127.0.0.1,192.168.48.0/24'/>
18:30:52:
18:30:52:  <!-- Network -->
18:30:52:  <proxy v=':8080'/>
18:30:52:
18:30:52:  <!-- Remote Command Server -->
18:30:52:  <password v='********'/>
18:30:52:
18:30:52:  <!-- Slot Control -->
18:30:52:  <power v='full'/>
18:30:52:
18:30:52:  <!-- User Information -->
18:30:52:  <passkey v='********************************'/>
18:30:52:  <team v='439'/>
18:30:52:  <user v='goodyca'/>
18:30:52:
18:30:52:  <!-- Work Unit Control -->
18:30:52:  <next-unit-percentage v='100'/>
18:30:52:
18:30:52:  <!-- Folding Slots -->
18:30:52:  <slot id='0' type='CPU'/>
18:30:52:</config>
18:30:52:Switching to user fahclient
18:30:52:Trying to access database...
18:30:53:Successfully acquired database lock
18:30:53:FS00:Set client configured
18:30:53:Enabled folding slot 00: READY cpu:12
...
02:21:59:WU01:FS00:Connecting to 65.254.110.245:8080
02:22:00:WU01:FS00:Assigned to work server 155.247.166.219
02:22:00:WU01:FS00:Requesting new work unit for slot 00: RUNNING cpu:12 from 155.247.166.219
02:22:00:WU01:FS00:Connecting to 155.247.166.219:8080
02:22:00:WU01:FS00:Downloading 1.24MiB
02:22:01:WU01:FS00:Download complete
02:22:01:WU01:FS00:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:14088 run:35 clone:7 gen:0 core:0xa7 unit:0x000000030002894b5d92494acf9fc747
02:22:01:WU01:FS00:Starting
02:22:01:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
02:22:01:WU01:FS00:Started FahCore on PID 11829
02:22:01:WU01:FS00:Core PID:11833
02:22:01:WU01:FS00:FahCore 0xa7 started
02:22:02:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T02:22:01Z ***********************
02:22:02:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
02:22:02:WU01:FS00:0xa7:       Type: 0xa7
02:22:02:WU01:FS00:0xa7:       Core: Gromacs
02:22:02:WU01:FS00:0xa7:    Website: https://foldingathome.org/
02:22:02:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
02:22:02:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
02:22:02:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 11829 -checkpoint 15 -np
02:22:02:WU01:FS00:0xa7:             12
02:22:02:WU01:FS00:0xa7:     Config: <none>
02:22:02:WU01:FS00:0xa7:************************************ Build *************************************
02:22:02:WU01:FS00:0xa7:    Version: 0.0.17
02:22:02:WU01:FS00:0xa7:       Date: Apr 27 2018
02:22:02:WU01:FS00:0xa7:       Time: 19:09:21
02:22:02:WU01:FS00:0xa7: Repository: Git
02:22:02:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
02:22:02:WU01:FS00:0xa7:     Branch: master
02:22:02:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
02:22:02:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
02:22:02:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
02:22:02:WU01:FS00:0xa7:       Bits: 64
02:22:02:WU01:FS00:0xa7:       Mode: Release
02:22:02:WU01:FS00:0xa7:       SIMD: avx_256
02:22:02:WU01:FS00:0xa7:************************************ System ************************************
02:22:02:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
02:22:02:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
02:22:02:WU01:FS00:0xa7:       CPUs: 12
02:22:02:WU01:FS00:0xa7:     Memory: 15.60GiB
02:22:02:WU01:FS00:0xa7:Free Memory: 8.86GiB
02:22:02:WU01:FS00:0xa7:    Threads: POSIX_THREADS
02:22:02:WU01:FS00:0xa7: OS Version: 5.2
02:22:02:WU01:FS00:0xa7:Has Battery: false
02:22:02:WU01:FS00:0xa7: On Battery: false
02:22:02:WU01:FS00:0xa7: UTC Offset: -5
02:22:02:WU01:FS00:0xa7:        PID: 11833
02:22:02:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
02:22:02:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
02:22:02:WU01:FS00:0xa7:    OS Arch: AMD64
02:22:02:WU01:FS00:0xa7:********************************************************************************
02:22:02:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
02:22:02:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
02:22:02:WU01:FS00:0xa7:Reading tar file core.xml
02:22:02:WU01:FS00:0xa7:Reading tar file frame0.tpr
02:22:02:WU01:FS00:0xa7:Digital signatures verified
02:22:02:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
02:22:02:WU01:FS00:0xa7:Steps: first=0 total=1250000
...
core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:12:33:WU01:FS00:0xa7:ERROR:
10:12:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:12:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:12:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:12:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:12:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:12:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:12:38:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:13:27:WU01:FS00:Starting
10:13:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094126.txt'
10:13:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:13:27:WU01:FS00:Started FahCore on PID 4448
10:13:27:WU01:FS00:Core PID:4452
10:13:27:WU01:FS00:FahCore 0xa7 started
10:13:27:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:13:27Z ***********************
10:13:27:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:13:27:WU01:FS00:0xa7:       Type: 0xa7
10:13:27:WU01:FS00:0xa7:       Core: Gromacs
10:13:27:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:13:27:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:13:27:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:13:27:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4448 -checkpoint 15 -np
10:13:27:WU01:FS00:0xa7:             12
10:13:27:WU01:FS00:0xa7:     Config: <none>
10:13:27:WU01:FS00:0xa7:************************************ Build *************************************
10:13:27:WU01:FS00:0xa7:    Version: 0.0.17
10:13:27:WU01:FS00:0xa7:       Date: Apr 27 2018
10:13:27:WU01:FS00:0xa7:       Time: 19:09:21
10:13:27:WU01:FS00:0xa7: Repository: Git
10:13:27:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:13:27:WU01:FS00:0xa7:     Branch: master
10:13:27:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:13:27:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:13:27:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:13:27:WU01:FS00:0xa7:       Bits: 64
10:13:27:WU01:FS00:0xa7:       Mode: Release
10:13:27:WU01:FS00:0xa7:       SIMD: avx_256
10:13:27:WU01:FS00:0xa7:************************************ System ************************************
10:13:27:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:13:27:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:13:27:WU01:FS00:0xa7:       CPUs: 12
10:13:27:WU01:FS00:0xa7:     Memory: 15.60GiB
10:13:27:WU01:FS00:0xa7:Free Memory: 715.39MiB
10:13:27:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:13:27:WU01:FS00:0xa7: OS Version: 5.2
10:13:27:WU01:FS00:0xa7:Has Battery: false
10:13:27:WU01:FS00:0xa7: On Battery: false
10:13:27:WU01:FS00:0xa7: UTC Offset: -5
10:13:27:WU01:FS00:0xa7:        PID: 4452
10:13:27:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:13:27:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:13:27:WU01:FS00:0xa7:    OS Arch: AMD64
10:13:27:WU01:FS00:0xa7:********************************************************************************
10:13:27:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:13:27:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:13:27:WU01:FS00:0xa7:Digital signatures verified
10:13:27:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:13:27:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:13:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:13:28:WU01:FS00:0xa7:ERROR:
10:13:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:13:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:13:28:WU01:FS00:0xa7:ERROR:
10:13:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:13:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:13:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:13:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:13:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:13:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:33:WU01:FS00:0xa7:ERROR:
10:13:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:13:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:13:33:WU01:FS00:0xa7:ERROR:
10:13:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:13:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:13:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:13:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:13:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:13:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:33:WU01:FS00:0xa7:ERROR:
10:13:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:13:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:13:33:WU01:FS00:0xa7:ERROR:
10:13:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:13:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:13:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:13:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:13:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:13:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:33:WU01:FS00:0xa7:ERROR:
10:13:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:13:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:13:33:WU01:FS00:0xa7:ERROR:
10:13:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:13:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:13:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:13:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:13:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:13:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:13:38:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:14:27:WU01:FS00:Starting
10:14:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094226.txt'
10:14:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:14:27:WU01:FS00:Started FahCore on PID 4611
10:14:27:WU01:FS00:Core PID:4615
10:14:27:WU01:FS00:FahCore 0xa7 started
10:14:27:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:14:27Z ***********************
10:14:27:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:14:27:WU01:FS00:0xa7:       Type: 0xa7
10:14:27:WU01:FS00:0xa7:       Core: Gromacs
10:14:27:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:14:27:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:14:27:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:14:27:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4611 -checkpoint 15 -np
10:14:27:WU01:FS00:0xa7:             12
10:14:27:WU01:FS00:0xa7:     Config: <none>
10:14:27:WU01:FS00:0xa7:************************************ Build *************************************
10:14:27:WU01:FS00:0xa7:    Version: 0.0.17
10:14:27:WU01:FS00:0xa7:       Date: Apr 27 2018
10:14:27:WU01:FS00:0xa7:       Time: 19:09:21
10:14:27:WU01:FS00:0xa7: Repository: Git
10:14:27:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:14:27:WU01:FS00:0xa7:     Branch: master
10:14:27:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:14:27:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:14:27:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:14:27:WU01:FS00:0xa7:       Bits: 64
10:14:27:WU01:FS00:0xa7:       Mode: Release
10:14:27:WU01:FS00:0xa7:       SIMD: avx_256
10:14:27:WU01:FS00:0xa7:************************************ System ************************************
10:14:27:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:14:27:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:14:27:WU01:FS00:0xa7:       CPUs: 12
10:14:27:WU01:FS00:0xa7:     Memory: 15.60GiB
10:14:27:WU01:FS00:0xa7:Free Memory: 691.30MiB
10:14:27:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:14:27:WU01:FS00:0xa7: OS Version: 5.2
10:14:27:WU01:FS00:0xa7:Has Battery: false
10:14:27:WU01:FS00:0xa7: On Battery: false
10:14:27:WU01:FS00:0xa7: UTC Offset: -5
10:14:27:WU01:FS00:0xa7:        PID: 4615
10:14:27:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:14:27:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:14:27:WU01:FS00:0xa7:    OS Arch: AMD64
10:14:27:WU01:FS00:0xa7:********************************************************************************
10:14:27:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:14:27:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:14:27:WU01:FS00:0xa7:Digital signatures verified
10:14:27:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:14:27:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:14:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:14:28:WU01:FS00:0xa7:ERROR:
10:14:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:14:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:14:28:WU01:FS00:0xa7:ERROR:
10:14:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:14:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:14:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:14:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:14:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:14:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:33:WU01:FS00:0xa7:ERROR:
10:14:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:14:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:14:33:WU01:FS00:0xa7:ERROR:
10:14:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:14:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:14:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:14:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:14:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:14:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:33:WU01:FS00:0xa7:ERROR:
10:14:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:14:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:14:33:WU01:FS00:0xa7:ERROR:
10:14:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:14:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:14:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:14:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:14:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:14:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:33:WU01:FS00:0xa7:ERROR:
10:14:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:14:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:14:33:WU01:FS00:0xa7:ERROR:
10:14:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:14:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:14:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:14:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:14:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:14:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:14:38:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:15:27:WU01:FS00:Starting
10:15:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094326.txt'
10:15:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:15:27:WU01:FS00:Started FahCore on PID 4660
10:15:27:WU01:FS00:Core PID:4664
10:15:27:WU01:FS00:FahCore 0xa7 started
10:15:27:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:15:27Z ***********************
10:15:27:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:15:27:WU01:FS00:0xa7:       Type: 0xa7
10:15:27:WU01:FS00:0xa7:       Core: Gromacs
10:15:27:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:15:27:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:15:27:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:15:27:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4660 -checkpoint 15 -np
10:15:27:WU01:FS00:0xa7:             12
10:15:27:WU01:FS00:0xa7:     Config: <none>
10:15:27:WU01:FS00:0xa7:************************************ Build *************************************
10:15:27:WU01:FS00:0xa7:    Version: 0.0.17
10:15:27:WU01:FS00:0xa7:       Date: Apr 27 2018
10:15:27:WU01:FS00:0xa7:       Time: 19:09:21
10:15:27:WU01:FS00:0xa7: Repository: Git
10:15:27:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:15:27:WU01:FS00:0xa7:     Branch: master
10:15:27:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:15:27:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:15:27:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:15:27:WU01:FS00:0xa7:       Bits: 64
10:15:27:WU01:FS00:0xa7:       Mode: Release
10:15:27:WU01:FS00:0xa7:       SIMD: avx_256
10:15:27:WU01:FS00:0xa7:************************************ System ************************************
10:15:27:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:15:27:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:15:27:WU01:FS00:0xa7:       CPUs: 12
10:15:27:WU01:FS00:0xa7:     Memory: 15.60GiB
10:15:27:WU01:FS00:0xa7:Free Memory: 686.78MiB
10:15:27:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:15:27:WU01:FS00:0xa7: OS Version: 5.2
10:15:27:WU01:FS00:0xa7:Has Battery: false
10:15:27:WU01:FS00:0xa7: On Battery: false
10:15:27:WU01:FS00:0xa7: UTC Offset: -5
10:15:27:WU01:FS00:0xa7:        PID: 4664
10:15:27:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:15:27:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:15:27:WU01:FS00:0xa7:    OS Arch: AMD64
10:15:27:WU01:FS00:0xa7:********************************************************************************
10:15:27:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:15:27:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:15:27:WU01:FS00:0xa7:Digital signatures verified
10:15:27:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:15:27:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:15:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:15:28:WU01:FS00:0xa7:ERROR:
10:15:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:15:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:15:28:WU01:FS00:0xa7:ERROR:
10:15:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:15:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:15:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:15:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:15:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:15:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:33:WU01:FS00:0xa7:ERROR:
10:15:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:15:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:15:33:WU01:FS00:0xa7:ERROR:
10:15:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:15:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:15:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:15:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:15:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:15:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:33:WU01:FS00:0xa7:ERROR:
10:15:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:15:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:15:33:WU01:FS00:0xa7:ERROR:
10:15:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:15:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:15:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:15:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:15:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:15:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:33:WU01:FS00:0xa7:ERROR:
10:15:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:15:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:15:33:WU01:FS00:0xa7:ERROR:
10:15:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:15:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:15:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:15:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:15:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:15:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:15:38:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:16:27:WU01:FS00:Starting
10:16:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094426.txt'
10:16:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:16:27:WU01:FS00:Started FahCore on PID 4744
10:16:27:WU01:FS00:Core PID:4748
10:16:27:WU01:FS00:FahCore 0xa7 started
10:16:27:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:16:27Z ***********************
10:16:27:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:16:27:WU01:FS00:0xa7:       Type: 0xa7
10:16:27:WU01:FS00:0xa7:       Core: Gromacs
10:16:27:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:16:27:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:16:27:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:16:27:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4744 -checkpoint 15 -np
10:16:27:WU01:FS00:0xa7:             12
10:16:27:WU01:FS00:0xa7:     Config: <none>
10:16:27:WU01:FS00:0xa7:************************************ Build *************************************
10:16:27:WU01:FS00:0xa7:    Version: 0.0.17
10:16:27:WU01:FS00:0xa7:       Date: Apr 27 2018
10:16:27:WU01:FS00:0xa7:       Time: 19:09:21
10:16:27:WU01:FS00:0xa7: Repository: Git
10:16:27:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:16:27:WU01:FS00:0xa7:     Branch: master
10:16:27:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:16:27:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:16:27:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:16:27:WU01:FS00:0xa7:       Bits: 64
10:16:27:WU01:FS00:0xa7:       Mode: Release
10:16:27:WU01:FS00:0xa7:       SIMD: avx_256
10:16:27:WU01:FS00:0xa7:************************************ System ************************************
10:16:27:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:16:27:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:16:27:WU01:FS00:0xa7:       CPUs: 12
10:16:27:WU01:FS00:0xa7:     Memory: 15.60GiB
10:16:27:WU01:FS00:0xa7:Free Memory: 674.27MiB
10:16:27:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:16:27:WU01:FS00:0xa7: OS Version: 5.2
10:16:27:WU01:FS00:0xa7:Has Battery: false
10:16:27:WU01:FS00:0xa7: On Battery: false
10:16:27:WU01:FS00:0xa7: UTC Offset: -5
10:16:27:WU01:FS00:0xa7:        PID: 4748
10:16:27:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:16:27:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:16:27:WU01:FS00:0xa7:    OS Arch: AMD64
10:16:27:WU01:FS00:0xa7:********************************************************************************
10:16:27:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:16:27:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:16:27:WU01:FS00:0xa7:Digital signatures verified
10:16:27:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:16:27:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:16:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:16:28:WU01:FS00:0xa7:ERROR:
10:16:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:16:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:16:28:WU01:FS00:0xa7:ERROR:
10:16:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:16:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:16:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:16:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:16:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:16:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:33:WU01:FS00:0xa7:ERROR:
10:16:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:16:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:16:33:WU01:FS00:0xa7:ERROR:
10:16:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:16:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:16:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:16:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:16:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:16:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:33:WU01:FS00:0xa7:ERROR:
10:16:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:16:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:16:33:WU01:FS00:0xa7:ERROR:
10:16:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:16:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:16:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:16:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:16:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:16:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:33:WU01:FS00:0xa7:ERROR:
10:16:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:16:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:16:33:WU01:FS00:0xa7:ERROR:
10:16:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:16:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:16:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:16:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:16:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:16:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:16:38:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:17:27:WU01:FS00:Starting
10:17:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094526.txt'
10:17:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:17:27:WU01:FS00:Started FahCore on PID 4785
10:17:27:WU01:FS00:Core PID:4789
10:17:27:WU01:FS00:FahCore 0xa7 started
10:17:28:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:17:27Z ***********************
10:17:28:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:17:28:WU01:FS00:0xa7:       Type: 0xa7
10:17:28:WU01:FS00:0xa7:       Core: Gromacs
10:17:28:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:17:28:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:17:28:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:17:28:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4785 -checkpoint 15 -np
10:17:28:WU01:FS00:0xa7:             12
10:17:28:WU01:FS00:0xa7:     Config: <none>
10:17:28:WU01:FS00:0xa7:************************************ Build *************************************
10:17:28:WU01:FS00:0xa7:    Version: 0.0.17
10:17:28:WU01:FS00:0xa7:       Date: Apr 27 2018
10:17:28:WU01:FS00:0xa7:       Time: 19:09:21
10:17:28:WU01:FS00:0xa7: Repository: Git
10:17:28:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:17:28:WU01:FS00:0xa7:     Branch: master
10:17:28:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:17:28:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:17:28:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:17:28:WU01:FS00:0xa7:       Bits: 64
10:17:28:WU01:FS00:0xa7:       Mode: Release
10:17:28:WU01:FS00:0xa7:       SIMD: avx_256
10:17:28:WU01:FS00:0xa7:************************************ System ************************************
10:17:28:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:17:28:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:17:28:WU01:FS00:0xa7:       CPUs: 12
10:17:28:WU01:FS00:0xa7:     Memory: 15.60GiB
10:17:28:WU01:FS00:0xa7:Free Memory: 682.62MiB
10:17:28:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:17:28:WU01:FS00:0xa7: OS Version: 5.2
10:17:28:WU01:FS00:0xa7:Has Battery: false
10:17:28:WU01:FS00:0xa7: On Battery: false
10:17:28:WU01:FS00:0xa7: UTC Offset: -5
10:17:28:WU01:FS00:0xa7:        PID: 4789
10:17:28:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:17:28:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:17:28:WU01:FS00:0xa7:    OS Arch: AMD64
10:17:28:WU01:FS00:0xa7:********************************************************************************
10:17:28:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:17:28:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:17:28:WU01:FS00:0xa7:Digital signatures verified
10:17:28:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:17:28:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:17:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:17:28:WU01:FS00:0xa7:ERROR:
10:17:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:17:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:17:28:WU01:FS00:0xa7:ERROR:
10:17:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:17:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:17:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:17:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:17:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:17:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:33:WU01:FS00:0xa7:ERROR:
10:17:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:17:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:17:33:WU01:FS00:0xa7:ERROR:
10:17:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:17:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:17:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:17:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:17:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:17:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:33:WU01:FS00:0xa7:ERROR:
10:17:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:17:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:17:33:WU01:FS00:0xa7:ERROR:
10:17:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:17:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:17:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:17:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:17:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:17:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:33:WU01:FS00:0xa7:ERROR:
10:17:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:17:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:17:33:WU01:FS00:0xa7:ERROR:
10:17:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:17:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:17:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:17:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:17:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:17:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:17:39:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:18:27:WU01:FS00:Starting
10:18:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094626.txt'
10:18:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:18:27:WU01:FS00:Started FahCore on PID 4829
10:18:27:WU01:FS00:Core PID:4833
10:18:27:WU01:FS00:FahCore 0xa7 started
10:18:28:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:18:27Z ***********************
10:18:28:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:18:28:WU01:FS00:0xa7:       Type: 0xa7
10:18:28:WU01:FS00:0xa7:       Core: Gromacs
10:18:28:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:18:28:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:18:28:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:18:28:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4829 -checkpoint 15 -np
10:18:28:WU01:FS00:0xa7:             12
10:18:28:WU01:FS00:0xa7:     Config: <none>
10:18:28:WU01:FS00:0xa7:************************************ Build *************************************
10:18:28:WU01:FS00:0xa7:    Version: 0.0.17
10:18:28:WU01:FS00:0xa7:       Date: Apr 27 2018
10:18:28:WU01:FS00:0xa7:       Time: 19:09:21
10:18:28:WU01:FS00:0xa7: Repository: Git
10:18:28:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:18:28:WU01:FS00:0xa7:     Branch: master
10:18:28:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:18:28:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:18:28:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:18:28:WU01:FS00:0xa7:       Bits: 64
10:18:28:WU01:FS00:0xa7:       Mode: Release
10:18:28:WU01:FS00:0xa7:       SIMD: avx_256
10:18:28:WU01:FS00:0xa7:************************************ System ************************************
10:18:28:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:18:28:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:18:28:WU01:FS00:0xa7:       CPUs: 12
10:18:28:WU01:FS00:0xa7:     Memory: 15.60GiB
10:18:28:WU01:FS00:0xa7:Free Memory: 4.70GiB
10:18:28:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:18:28:WU01:FS00:0xa7: OS Version: 5.2
10:18:28:WU01:FS00:0xa7:Has Battery: false
10:18:28:WU01:FS00:0xa7: On Battery: false
10:18:28:WU01:FS00:0xa7: UTC Offset: -5
10:18:28:WU01:FS00:0xa7:        PID: 4833
10:18:28:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:18:28:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:18:28:WU01:FS00:0xa7:    OS Arch: AMD64
10:18:28:WU01:FS00:0xa7:********************************************************************************
10:18:28:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:18:28:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:18:28:WU01:FS00:0xa7:Digital signatures verified
10:18:28:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:18:28:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:18:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:18:28:WU01:FS00:0xa7:ERROR:
10:18:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:18:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:18:28:WU01:FS00:0xa7:ERROR:
10:18:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:18:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:18:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:18:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:18:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:18:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:33:WU01:FS00:0xa7:ERROR:
10:18:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:18:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:18:33:WU01:FS00:0xa7:ERROR:
10:18:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:18:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:18:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:18:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:18:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:18:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:33:WU01:FS00:0xa7:ERROR:
10:18:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:18:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:18:33:WU01:FS00:0xa7:ERROR:
10:18:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:18:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:18:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:18:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:18:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:18:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:33:WU01:FS00:0xa7:ERROR:
10:18:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:18:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:18:33:WU01:FS00:0xa7:ERROR:
10:18:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:18:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:18:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:18:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:18:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:18:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:18:39:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
10:19:27:WU01:FS00:Starting
10:19:27:WU01:FS00:Removing old file './work/01/logfile_01-20191007-094726.txt'
10:19:27:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
10:19:27:WU01:FS00:Started FahCore on PID 4862
10:19:27:WU01:FS00:Core PID:4866
10:19:27:WU01:FS00:FahCore 0xa7 started
10:19:28:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T10:19:27Z ***********************
10:19:28:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
10:19:28:WU01:FS00:0xa7:       Type: 0xa7
10:19:28:WU01:FS00:0xa7:       Core: Gromacs
10:19:28:WU01:FS00:0xa7:    Website: https://foldingathome.org/
10:19:28:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
10:19:28:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
10:19:28:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 4862 -checkpoint 15 -np
10:19:28:WU01:FS00:0xa7:             12
10:19:28:WU01:FS00:0xa7:     Config: <none>
10:19:28:WU01:FS00:0xa7:************************************ Build *************************************
10:19:28:WU01:FS00:0xa7:    Version: 0.0.17
10:19:28:WU01:FS00:0xa7:       Date: Apr 27 2018
10:19:28:WU01:FS00:0xa7:       Time: 19:09:21
10:19:28:WU01:FS00:0xa7: Repository: Git
10:19:28:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
10:19:28:WU01:FS00:0xa7:     Branch: master
10:19:28:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
10:19:28:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
10:19:28:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
10:19:28:WU01:FS00:0xa7:       Bits: 64
10:19:28:WU01:FS00:0xa7:       Mode: Release
10:19:28:WU01:FS00:0xa7:       SIMD: avx_256
10:19:28:WU01:FS00:0xa7:************************************ System ************************************
10:19:28:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
10:19:28:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
10:19:28:WU01:FS00:0xa7:       CPUs: 12
10:19:28:WU01:FS00:0xa7:     Memory: 15.60GiB
10:19:28:WU01:FS00:0xa7:Free Memory: 4.68GiB
10:19:28:WU01:FS00:0xa7:    Threads: POSIX_THREADS
10:19:28:WU01:FS00:0xa7: OS Version: 5.2
10:19:28:WU01:FS00:0xa7:Has Battery: false
10:19:28:WU01:FS00:0xa7: On Battery: false
10:19:28:WU01:FS00:0xa7: UTC Offset: -5
10:19:28:WU01:FS00:0xa7:        PID: 4866
10:19:28:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
10:19:28:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
10:19:28:WU01:FS00:0xa7:    OS Arch: AMD64
10:19:28:WU01:FS00:0xa7:********************************************************************************
10:19:28:WU01:FS00:0xa7:Project: 14088 (Run 35, Clone 7, Gen 0)
10:19:28:WU01:FS00:0xa7:Unit: 0x000000030002894b5d92494acf9fc747
10:19:28:WU01:FS00:0xa7:Digital signatures verified
10:19:28:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
10:19:28:WU01:FS00:0xa7:Steps: first=0 total=1250000
10:19:28:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
10:19:28:WU01:FS00:0xa7:ERROR:
10:19:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:28:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:19:28:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:19:28:WU01:FS00:0xa7:ERROR:
10:19:28:WU01:FS00:0xa7:ERROR:Fatal error:
10:19:28:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:19:28:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:19:28:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:19:28:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:19:28:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:33:WU01:FS00:0xa7:ERROR:
10:19:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:19:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:19:33:WU01:FS00:0xa7:ERROR:
10:19:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:19:33:WU01:FS00:0xa7:ERROR:7739 particles communicated to PME rank 8 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:19:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:19:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:19:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:19:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:33:WU01:FS00:0xa7:ERROR:
10:19:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:19:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:19:33:WU01:FS00:0xa7:ERROR:
10:19:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:19:33:WU01:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:19:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:19:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:19:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:19:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:33:WU01:FS00:0xa7:ERROR:
10:19:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:33:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
10:19:33:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
10:19:33:WU01:FS00:0xa7:ERROR:
10:19:33:WU01:FS00:0xa7:ERROR:Fatal error:
10:19:33:WU01:FS00:0xa7:ERROR:7818 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
10:19:33:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
10:19:33:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
10:19:33:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
10:19:33:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
10:19:39:WU01:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
Top
parkut
Posts: 363
Joined: Tue Feb 12, 2008 7:33 am
Hardware configuration: Running exclusively Linux headless blades. All are dedicated crunching machines.
Location: SE Michigan, USA

Project: 14088 (Run 187, Clone 8, Gen 0) Fatal Error

Post by parkut »

Code: Select all

13:21:19:WU00:FS00:0xa7:*********************** Log Started 2019-10-07T13:21:18Z ***********************
13:21:19:WU00:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
13:21:19:WU00:FS00:0xa7:       Type: 0xa7
13:21:19:WU00:FS00:0xa7:       Core: Gromacs
13:21:19:WU00:FS00:0xa7:    Website: https://foldingathome.org/
13:21:19:WU00:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
13:21:19:WU00:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
13:21:19:WU00:FS00:0xa7:       Args: -dir 00 -suffix 01 -version 705 -lifeline 20400 -checkpoint 15 -np
13:21:19:WU00:FS00:0xa7:             7
13:21:19:WU00:FS00:0xa7:     Config: <none>
13:21:19:WU00:FS00:0xa7:************************************ Build *************************************
13:21:19:WU00:FS00:0xa7:    Version: 0.0.17
13:21:19:WU00:FS00:0xa7:       Date: Apr 27 2018
13:21:19:WU00:FS00:0xa7:       Time: 19:09:21
13:21:19:WU00:FS00:0xa7: Repository: Git
13:21:19:WU00:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
13:21:19:WU00:FS00:0xa7:     Branch: master
13:21:19:WU00:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
13:21:19:WU00:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
13:21:19:WU00:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
13:21:19:WU00:FS00:0xa7:       Bits: 64
13:21:19:WU00:FS00:0xa7:       Mode: Release
13:21:19:WU00:FS00:0xa7:       SIMD: avx_256
13:21:19:WU00:FS00:0xa7:************************************ System ************************************
13:21:19:WU00:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-3770 CPU @ 3.40GHz
13:21:19:WU00:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 58 Stepping 9
13:21:19:WU00:FS00:0xa7:       CPUs: 8
13:21:19:WU00:FS00:0xa7:     Memory: 3.56GiB
13:21:19:WU00:FS00:0xa7:Free Memory: 1.65GiB
13:21:19:WU00:FS00:0xa7:    Threads: POSIX_THREADS
13:21:19:WU00:FS00:0xa7: OS Version: 4.15
13:21:19:WU00:FS00:0xa7:Has Battery: false
13:21:19:WU00:FS00:0xa7: On Battery: false
13:21:19:WU00:FS00:0xa7: UTC Offset: -4
13:21:19:WU00:FS00:0xa7:        PID: 20404
13:21:19:WU00:FS00:0xa7:        CWD: /var/lib/fahclient/work
13:21:19:WU00:FS00:0xa7:         OS: Linux 4.15.0-20-generic x86_64
13:21:19:WU00:FS00:0xa7:    OS Arch: AMD64
13:21:19:WU00:FS00:0xa7:********************************************************************************
13:21:19:WU00:FS00:0xa7:Project: 14088 (Run 187, Clone 8, Gen 0)
13:21:19:WU00:FS00:0xa7:Unit: 0x000000000002894b5d9248ea52b1c83e
13:21:19:WU00:FS00:0xa7:Digital signatures verified
13:21:19:WU00:FS00:0xa7:Reducing thread count from 7 to 6 to avoid domain decomposition by a prime number > 3
13:21:19:WU00:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 6
13:21:19:WU00:FS00:0xa7:Steps: first=0 total=1250000
13:21:19:WU00:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
13:21:19:WU00:FS00:0xa7:ERROR:
13:21:19:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:19:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
13:21:19:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
13:21:19:WU00:FS00:0xa7:ERROR:
13:21:19:WU00:FS00:0xa7:ERROR:Fatal error:
13:21:19:WU00:FS00:0xa7:ERROR:4 particles communicated to PME rank 2 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
13:21:19:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
13:21:19:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
13:21:19:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
13:21:19:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:24:WU00:FS00:0xa7:ERROR:
13:21:24:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:24:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
13:21:24:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
13:21:24:WU00:FS00:0xa7:ERROR:
13:21:24:WU00:FS00:0xa7:ERROR:Fatal error:
13:21:24:WU00:FS00:0xa7:ERROR:7739 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
13:21:24:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
13:21:24:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
13:21:24:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
13:21:24:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:24:WU00:FS00:0xa7:ERROR:
13:21:24:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:24:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
13:21:24:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
13:21:24:WU00:FS00:0xa7:ERROR:
13:21:24:WU00:FS00:0xa7:ERROR:Fatal error:
13:21:24:WU00:FS00:0xa7:ERROR:7811 particles communicated to PME rank 0 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
13:21:24:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
13:21:24:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
13:21:24:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
13:21:24:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:24:WU00:FS00:0xa7:ERROR:
13:21:24:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:24:WU00:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
13:21:24:WU00:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
13:21:24:WU00:FS00:0xa7:ERROR:
13:21:24:WU00:FS00:0xa7:ERROR:Fatal error:
13:21:24:WU00:FS00:0xa7:ERROR:7818 particles communicated to PME rank 2 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
13:21:24:WU00:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
13:21:24:WU00:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
13:21:24:WU00:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
13:21:24:WU00:FS00:0xa7:ERROR:-------------------------------------------------------
13:21:29:WU00:FS00:FahCore returned: INTERRUPTED (102 = 0x66)
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goodyca
Posts: 187
Joined: Sun Dec 02, 2007 12:36 pm

Re: 14088 BAD_WORK_UNIT

Post by goodyca »

Just got another one. :(

Code: Select all

14:09:24:WU01:FS00:Connecting to 65.254.110.245:8080
14:09:24:WU01:FS00:Assigned to work server 155.247.166.219
14:09:24:WU01:FS00:Requesting new work unit for slot 00: RUNNING cpu:12 from 155.247.166.219
14:09:24:WU01:FS00:Connecting to 155.247.166.219:8080
14:09:25:WU01:FS00:Downloading 1.24MiB
14:09:25:WU00:FS00:0xa7:Saving result file ../logfile_01.txt
14:09:25:WU01:FS00:Download complete
14:09:26:WU01:FS00:Received Unit: id:01 state:DOWNLOAD error:NO_ERROR project:14088 run:67 clone:9 gen:0 core:0xa7 unit:0x000000010002894b5d924936880f7fa7
14:09:26:WU01:FS00:Starting
14:09:26:WU01:FS00:Running FahCore: /usr/bin/FAHCoreWrapper /var/lib/fahclient/cores/cores.foldingathome.org/Linux/AMD64/AVX/Core_a7.fah/FahCore_a7 -dir 01 -suffix 01 -version 705 -lifeline 1684 -checkpoint 15 -np 12
14:09:26:WU01:FS00:Started FahCore on PID 17408
14:09:26:WU01:FS00:Core PID:17412
14:09:26:WU01:FS00:FahCore 0xa7 started
14:09:26:WU01:FS00:0xa7:*********************** Log Started 2019-10-07T14:09:26Z ***********************
14:09:26:WU01:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
14:09:26:WU01:FS00:0xa7:       Type: 0xa7
14:09:26:WU01:FS00:0xa7:       Core: Gromacs
14:09:26:WU01:FS00:0xa7:    Website: https://foldingathome.org/
14:09:26:WU01:FS00:0xa7:  Copyright: (c) 2009-2018 foldingathome.org
14:09:26:WU01:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
14:09:26:WU01:FS00:0xa7:       Args: -dir 01 -suffix 01 -version 705 -lifeline 17408 -checkpoint 15 -np
14:09:26:WU01:FS00:0xa7:             12
14:09:26:WU01:FS00:0xa7:     Config: <none>
14:09:26:WU01:FS00:0xa7:************************************ Build *************************************
14:09:26:WU01:FS00:0xa7:    Version: 0.0.17
14:09:26:WU01:FS00:0xa7:       Date: Apr 27 2018
14:09:26:WU01:FS00:0xa7:       Time: 19:09:21
14:09:26:WU01:FS00:0xa7: Repository: Git
14:09:26:WU01:FS00:0xa7:   Revision: 21359963583d09ec2063ef946399441c4df4ccd7
14:09:26:WU01:FS00:0xa7:     Branch: master
14:09:26:WU01:FS00:0xa7:   Compiler: GNU 6.3.0 20170516
14:09:26:WU01:FS00:0xa7:    Options: -std=gnu++98 -O3 -funroll-loops
14:09:26:WU01:FS00:0xa7:   Platform: linux2 4.14.0-3-amd64
14:09:26:WU01:FS00:0xa7:       Bits: 64
14:09:26:WU01:FS00:0xa7:       Mode: Release
14:09:26:WU01:FS00:0xa7:       SIMD: avx_256
14:09:26:WU01:FS00:0xa7:************************************ System ************************************
14:09:26:WU01:FS00:0xa7:        CPU: Intel(R) Core(TM) i7-4930K CPU @ 3.40GHz
14:09:26:WU01:FS00:0xa7:     CPU ID: GenuineIntel Family 6 Model 62 Stepping 4
14:09:26:WU01:FS00:0xa7:       CPUs: 12
14:09:26:WU01:FS00:0xa7:     Memory: 15.60GiB
14:09:26:WU01:FS00:0xa7:Free Memory: 4.17GiB
14:09:26:WU01:FS00:0xa7:    Threads: POSIX_THREADS
14:09:26:WU01:FS00:0xa7: OS Version: 5.2
14:09:26:WU01:FS00:0xa7:Has Battery: false
14:09:26:WU01:FS00:0xa7: On Battery: false
14:09:26:WU01:FS00:0xa7: UTC Offset: -5
14:09:26:WU01:FS00:0xa7:        PID: 17412
14:09:26:WU01:FS00:0xa7:        CWD: /var/lib/fahclient/work
14:09:26:WU01:FS00:0xa7:         OS: Linux 5.2.17-200.fc30.x86_64 x86_64
14:09:26:WU01:FS00:0xa7:    OS Arch: AMD64
14:09:26:WU01:FS00:0xa7:********************************************************************************
14:09:26:WU01:FS00:0xa7:Project: 14088 (Run 67, Clone 9, Gen 0)
14:09:26:WU01:FS00:0xa7:Unit: 0x000000010002894b5d924936880f7fa7
14:09:26:WU01:FS00:0xa7:Reading tar file core.xml
14:09:26:WU01:FS00:0xa7:Reading tar file frame0.tpr
14:09:26:WU01:FS00:0xa7:Digital signatures verified
14:09:26:WU01:FS00:0xa7:Calling: mdrun -s frame0.tpr -o frame0.trr -cpt 15 -nt 12
14:09:26:WU01:FS00:0xa7:Steps: first=0 total=1250000
14:09:27:WU01:FS00:0xa7:Completed 1 out of 1250000 steps (0%)
14:09:27:WU01:FS00:0xa7:ERROR:
14:09:27:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
14:09:27:WU01:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20161122-4846b12ba-unknown
14:09:27:WU01:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/pme.c, line: 754
14:09:27:WU01:FS00:0xa7:ERROR:
14:09:27:WU01:FS00:0xa7:ERROR:Fatal error:
14:09:27:WU01:FS00:0xa7:ERROR:4 particles communicated to PME rank 4 are more than 2/3 times the cut-off out of the domain decomposition cell of their charge group in dimension x.
14:09:27:WU01:FS00:0xa7:ERROR:This usually means that your system is not well equilibrated.
14:09:27:WU01:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
14:09:27:WU01:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
14:09:27:WU01:FS00:0xa7:ERROR:-------------------------------------------------------
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absolutefunk
Posts: 22
Joined: Mon Mar 10, 2014 1:41 am

Re: 14088 BAD_WORK_UNIT

Post by absolutefunk »

Can confirm these are still being assigned.

-Brian
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bruce
Posts: 20824
Joined: Thu Nov 29, 2007 10:13 pm
Location: So. Cal.

Re: 14088 BAD_WORK_UNIT

Post by bruce »

Project 14088 has been removed from the server a couple of hours ago. Please post if any more are assigned after this notification.
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