Here're excerpts from the log:
--- Opening Log file [January 2 05:01:17]
# Windows Graphical Edition ###################################################
###############################################################################
Folding@Home Client Version 5.03
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: C:\Program Files\Folding@Home
[05:01:47] - Ask before connecting: No
[05:01:47] - User name: Rayearle (Team 0)
[05:01:47] - User ID not found locally
[05:01:47] + Requesting User ID from server
[05:01:47] - Machine ID: 1
[05:01:47]
[05:01:47] Work directory not found. Creating...
[05:01:47] Could not open work queue, generating new queue...
[05:01:47] Initialization complete
[05:01:47] + Benchmarking ...
[05:01:51] - Preparing to get new work unit...
[05:01:51] + Attempting to get work packet
[05:01:51] - Connecting to assignment server
[05:01:51] - Successful: assigned to (171.64.122.82).
[05:01:51] + News From Folding@Home: Welcome to Folding@Home
[05:01:51] Loaded queue successfully.
[05:01:53] + Closed connections
[05:01:53]
[05:01:53] + Processing work unit
[05:01:53] Core required: FahCore_81.exe
[05:01:53] Core not found.
[05:01:53] - Core is not present or corrupted.
[05:01:53] - Attempting to download new core...
[05:01:53] + Downloading new core: FahCore_81.exe
[05:01:53] + 10240 bytes downloaded
[05:01:53] + 20480 bytes downloaded
[05:01:53] + 30720 bytes downloaded
...
[05:01:54] + 808960 bytes downloaded
[05:01:54] + 819200 bytes downloaded
[05:01:54] + 825684 bytes downloaded
[05:01:54] Verifying core Core_81.fah...
[05:01:54] Signature is VALID
[05:01:54]
[05:01:54] Trying to unzip core FahCore_81.exe
[05:01:55] Decompressed FahCore_81.exe (2396160 bytes) successfully
[05:01:55] + Core successfully engaged
[05:02:00]
[05:02:00] + Processing work unit
[05:02:00] Core required: FahCore_81.exe
[05:02:00] Core found.
[05:02:00] Working on Unit 01 [January 2 05:02:00]
[05:02:00] + Working ...
[05:02:00]
[05:02:00] *------------------------------*
[05:02:00] Folding@Home Gromacs Simulated Tempering Core
[05:02:00] Version 1.10 (Oct 4, 2007)
[05:02:00]
[05:02:00] Preparing to commence simulation
[05:02:00] - Looking at optimizations...
[05:02:00] - Created dyn
[05:02:00] - Files status OK
[05:02:00] - Expanded 364370 -> 1797779 (decompressed 493.3 percent)
[05:02:00] - Starting from initial work packet
[05:02:00]
[05:02:00] Project: 3608 (Run 26, Clone 4, Gen 3)
[05:02:00]
[05:02:01] Assembly optimizations on if available.
[05:02:01] Entering M.D.
[05:02:07] Protein: p3608_Seq23_Amber03_Extended
[05:02:07]
[05:02:07] Writing local files
[05:02:45] Extra SSE boost OK.
[05:02:45] Writing local files
[05:02:45] Completed 0 out of 1500000 steps (0)
[05:59:36] Writing local files
[05:59:36] Completed 15000 out of 1500000 steps (1)
[06:56:21] Writing local files
[06:56:22] Completed 30000 out of 1500000 steps (2)
[07:53:12] Writing local files
[07:53:12] Completed 45000 out of 1500000 steps (3)
...
[01:00:52] Completed 1455000 out of 1500000 steps (97)
[01:57:36] Writing local files
[01:57:36] Completed 1470000 out of 1500000 steps (98)
[02:54:24] Writing local files
[02:54:24] Completed 1485000 out of 1500000 steps (99)
[03:51:14] Writing local files
[03:51:14] Completed 1500000 out of 1500000 steps (100)
[03:51:14] Writing final coordinates.
[03:51:14] Past main M.D. loop
[03:52:14]
[03:52:14] Finished Work Unit:
[03:52:14] - Reading up to 297312 from "work/wudata_01.arc": Read 297312
[03:52:14] - Reading up to 476264 from "work/wudata_01.xtc": Read 476264
[03:52:14] goefile size: 0
[03:52:14] logfile size: 51434
[03:52:14] Leaving Run
[03:52:18] - Writing 958236 bytes of core data to disk...
[03:52:19] Done: 957724 -> 778520 (compressed to 81.2 percent)
[03:52:19] ... Done.
[03:52:20] - Shutting down core
[03:52:20]
[03:52:20] Folding@home Core Shutdown: FINISHED_UNIT
[03:52:24] CoreStatus = 64 (100)
[03:52:24] Sending work to server
[03:52:24] + Attempting to send results
[03:52:35] + Results successfully sent
[03:52:35] Thank you for your contribution to Folding@Home.
[03:52:35] + Starting local stats count at 1
[03:52:39] - Preparing to get new work unit...
[03:52:39] + Attempting to get work packet
[03:52:39] - Connecting to assignment server
[03:52:40] - Successful: assigned to (171.64.122.72).
[03:52:40] + News From Folding@Home: Welcome to Folding@Home
[03:52:40] Loaded queue successfully.
[03:52:42] + Closed connections
[03:52:42]
[03:52:42] + Processing work unit
[03:52:42] Core required: FahCore_80.exe
[03:52:42] Core not found.
[03:52:42] - Core is not present or corrupted.
[03:52:42] - Attempting to download new core...
[03:52:42] + Downloading new core: FahCore_80.exe
[03:52:42] + 10240 bytes downloaded
[03:52:42] + 20480 bytes downloaded
[03:52:42] + 30720 bytes downloaded
...
[03:52:43] + 808960 bytes downloaded
[03:52:43] + 819200 bytes downloaded
[03:52:43] + 825683 bytes downloaded
[03:52:43] Verifying core Core_80.fah...
[03:52:43] Signature is VALID
[03:52:43]
[03:52:43] Trying to unzip core FahCore_80.exe
[03:52:44] Decompressed FahCore_80.exe (2392064 bytes) successfully
[03:52:44] + Core successfully engaged
[03:52:49]
[03:52:49] + Processing work unit
[03:52:49] Core required: FahCore_80.exe
[03:52:49] Core found.
[03:52:49] Working on Unit 02 [January 6 03:52:49]
[03:52:49] + Working ...
[03:52:49]
[03:52:49] *------------------------------*
[03:52:49] Folding@Home Gromacs SREM Core
[03:52:49] Version 1.02 (Dec 15, 2006)
[03:52:49]
[03:52:49] Preparing to commence simulation
[03:52:49] - Looking at optimizations...
[03:52:49] - Created dyn
[03:52:49] - Files status OK
[03:52:49] - Expanded 427235 -> 1981641 (decompressed 463.8 percent)
[03:52:49] - Starting from initial work packet
[03:52:49]
[03:52:49] Project: 3680 (Run 45, Clone 9, Gen 5)
[03:52:49]
[03:52:49] Assembly optimizations on if available.
[03:52:49] Entering M.D.
[03:52:56] Protein: p3680_Seq11_Amber03_Extended
[03:52:56]
[03:52:56] Writing local files
[03:53:33] Extra SSE boost OK.
[03:53:33] Writing local files
[03:53:33] Completed 0 out of 1500000 steps (0)
[04:51:08] Writing local files
[04:51:08] Completed 15000 out of 1500000 steps (1)
[05:02:11] + Working...
[05:48:24] Writing local files
[05:48:24] Completed 30000 out of 1500000 steps (2)
[06:45:49] Writing local files
[06:45:49] Completed 45000 out of 1500000 steps (3)
...
[18:54:25] Writing local files
[18:54:25] Completed 990000 out of 1500000 steps (66)
[19:51:41] Writing local files
[19:51:41] Completed 1005000 out of 1500000 steps (67)
[19:55:20] + Paused
[19:55:21] Suspending work thread...
[20:01:03] + Working ...
[20:01:03] Resuming work thread...
[20:54:45] Writing local files
[20:54:45] Completed 1020000 out of 1500000 steps (68)
[21:52:13] Writing local files
[21:52:13] Completed 1035000 out of 1500000 steps (69)
...
[07:25:18] Completed 1185000 out of 1500000 steps (79)
[08:22:39] Writing local files
[08:22:39] Completed 1200000 out of 1500000 steps (80)
[09:20:08] Writing local files
[09:20:08] Completed 1215000 out of 1500000 steps (81)
<end of log>