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Code: Select all
Arguments: -smp 32 -verbosity 9 -forceasm -send all
[20:53:53] - Ask before connecting: No
[20:53:53] - User name: For_Caitlin (Team 14)
[20:53:53] - User ID: XXXXXXXXXXXXXXX
[20:53:53] - Machine ID: 1
[20:53:53]
[20:53:53] Loaded queue successfully.
[20:53:53] Attempting to return result(s) to server...
[20:53:53] Trying to send all finished work units
[20:53:53] Project: 6903 (Run 7, Clone 1, Gen 32)
[20:53:53] + Attempting to send results [October 5 20:53:53 UTC]
[20:53:53] - Reading file work/wuresults_06.dat from core
[20:53:53] (Read 222593315 bytes from disk)
[20:53:53] Connecting to http://130.237.232.237:8080/
Code: Select all
Arguments: -smp 32 -verbosity 9 -forceasm
[02:39:46] - Ask before connecting: No
[02:39:46] - User name: For_Caitlin (Team 14)
[02:39:46] - User ID: xxxxxxxxxxx
[02:39:46] - Machine ID: 1
[02:39:46]
[02:39:46] Loaded queue successfully.
[02:39:46] - Preparing to get new work unit...
[02:39:46] Cleaning up work directory
[02:39:46] - Autosending finished units... [October 6 02:39:46 UTC]
[02:39:46] Trying to send all finished work units
[02:39:46] Project: 6903 (Run 7, Clone 1, Gen 32)
[02:39:46] + Attempting to send results [October 6 02:39:46 UTC]
[02:39:46] - Reading file work/wuresults_06.dat from core
[02:39:46] + Attempting to get work packet
[02:39:47] Passkey found
[02:39:47] (Read 222593315 bytes from disk)
[02:39:47] - Will indicate memory of 386972 MB
[02:39:47] Connecting to http://130.237.232.237:8080/
[02:39:47] - Connecting to assignment server
[02:39:47] Connecting to http://assign.stanford.edu:8080/
[02:39:47] Posted data.
[02:39:47] Initial: 8F80; - Successful: assigned to (128.143.199.96).
[02:39:47] + News From Folding@Home: Welcome to Folding@Home
[02:39:47] Loaded queue successfully.
[02:39:47] Sent data
[02:39:47] Connecting to http://128.143.199.96:8080/
[02:39:48] Posted data.
[02:39:48] Initial: 0000; - Receiving payload (expected size: 1772859)
[02:39:49] - Downloaded at ~1731 kB/s
[02:39:49] - Averaged speed for that direction ~2331 kB/s
[02:39:49] + Received work.
[02:39:49] + Closed connections
[02:39:49]
[02:39:49] + Processing work unit
[02:39:49] Core required: FahCore_a3.exe
[02:39:49] Core found.
[02:39:49] Working on queue slot 07 [October 6 02:39:49 UTC]
[02:39:49] + Working ...
[02:39:49] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 07 -np 32 -checkpoint 15 -forceasm -verbose -lifeline 18095 -version 634'
[02:39:50]
[02:39:50] *------------------------------*
[02:39:50] Folding@Home Gromacs SMP Core
[02:39:50] Version 2.27 (Dec. 15, 2010)
[02:39:50]
[02:39:50] Preparing to commence simulation
[02:39:50] - Assembly optimizations manually forced on.
[02:39:50] - Not checking prior termination.
[02:39:50] - Expanded 1772347 -> 1969808 (decompressed 111.1 percent)
[02:39:50] Called DecompressByteArray: compressed_data_size=1772347 data_size=1969808, decompressed_data_size=1969808 diff=0
[02:39:50] - Digital signature verified
[02:39:50]
[02:39:50] Project: 7135 (Run 0, Clone 81, Gen 79)
[02:39:50]
[02:39:50] Assembly optimizations on if available.
[02:39:50] Entering M.D.
:-) G R O M A C S (-:
Groningen Machine for Chemical Simulation
:-) VERSION 4.5.3 (-:
Written by Emile Apol, Rossen Apostolov, Herman J.C. Berendsen,
Aldert van Buuren, Pär Bjelkmar, Rudi van Drunen, Anton Feenstra,
Gerrit Groenhof, Peter Kasson, Per Larsson, Pieter Meulenhoff,
Teemu Murtola, Szilard Pall, Sander Pronk, Roland Schulz,
Michael Shirts, Alfons Sijbers, Peter Tieleman,
Berk Hess, David van der Spoel, and Erik Lindahl.
Copyright (c) 1991-2000, University of Groningen, The Netherlands.
Copyright (c) 2001-2010, The GROMACS development team at
Uppsala University & The Royal Institute of Technology, Sweden.
check out http://www.gromacs.org for more information.
:-) Gromacs (-:
Reading file work/wudata_07.tpr, VERSION 4.5.3-dev-20101113-8af87 (single precision)
Starting 32 threads
[02:39:56] Mapping NT from 32 to 32
Making 2D domain decomposition 8 x 4 x 1
starting mdrun 'Mutant_scan'
40000004 steps, 80000.0 ps (continuing from step 39500004, 79000.0 ps).
[02:39:57] Completed 0 out of 500000 steps (0%)
NOTE: Turning on dynamic load balancing
[02:40:50] Completed 5000 out of 500000 steps (1%)
<snip>
[04:07:10] Completed 500000 out of 500000 steps (100%)
Writing final coordinates.
Average load imbalance: 1.2 %
Part of the total run time spent waiting due to load imbalance: 0.5 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % Y 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 5234.256 5234.256 100.0
1h27:14
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 1172.948 78.180 16.507 1.454
Thanx for Using GROMACS - Have a Nice Day
[04:07:11] DynamicWrapper: Finished Work Unit: sleep=10000
[04:07:21]
[04:07:21] Finished Work Unit:
[04:07:21] - Reading up to 3711024 from "work/wudata_07.trr": Read 3711024
[04:07:21] trr file hash check passed.
[04:07:21] edr file hash check passed.
[04:07:21] logfile size: 58192
[04:07:21] Leaving Run
[04:07:25] - Writing 3804776 bytes of core data to disk...
[04:07:26] Done: 3804264 -> 3526152 (compressed to 92.6 percent)
[04:07:26] ... Done.
[04:07:26] - Shutting down core
[04:07:26]
[04:07:26] Folding@home Core Shutdown: FINISHED_UNIT
[04:07:27] CoreStatus = 64 (100)
[04:07:27] Unit 7 finished with 98 percent of time to deadline remaining.
[04:07:27] Updated performance fraction: 0.881200
[04:07:27] Sending work to server
[04:07:27] - Already sending work
[04:07:27] Trying to send all finished work units
[04:07:27] - Already sending work
[04:07:27] - Already sending work
[04:07:27] + Sent 0 of 2 completed units to the server
[04:07:27] - Preparing to get new work unit...
[04:07:27] Cleaning up work directory
[04:07:27] + Attempting to get work packet
[04:07:27] Passkey found
[04:07:27] - Will indicate memory of 386972 MB
[04:07:27] - Connecting to assignment server
[04:07:27] Connecting to http://assign.stanford.edu:8080/
[04:07:27] Posted data.
[04:07:27] Initial: 8F80; - Successful: assigned to (128.143.199.96).
[04:07:27] + News From Folding@Home: Welcome to Folding@Home
[04:07:27] Loaded queue successfully.
[04:07:27] Sent data
[04:07:27] Connecting to http://128.143.199.96:8080/
[04:07:28] Posted data.
[04:07:28] Initial: 0000; - Receiving payload (expected size: 1770077)
[04:07:29] - Downloaded at ~1728 kB/s
[04:07:29] - Averaged speed for that direction ~2210 kB/s
[04:07:29] + Received work.
[04:07:29] Trying to send all finished work units
[04:07:29] - Already sending work
[04:07:29] - Already sending work
[04:07:29] + Sent 0 of 2 completed units to the server
[04:07:29] + Closed connections
[04:07:29]
[04:07:29] + Processing work unit
[04:07:29] Core required: FahCore_a3.exe
[04:07:29] Core found.
[04:07:29] Working on queue slot 08 [October 6 04:07:29 UTC]
[04:07:29] + Working ...
[04:07:29] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 08 -np 32 -checkpoint 15 -forceasm -verbose -lifeline 18095 -version 634'
[04:07:29]
[04:07:29] *------------------------------*
[04:07:29] Folding@Home Gromacs SMP Core
[04:07:29] Version 2.27 (Dec. 15, 2010)
[04:07:29]
[04:07:29] Preparing to commence simulation
[04:07:29] - Assembly optimizations manually forced on.
[04:07:29] - Not checking prior termination.
[04:07:30] - Expanded 1769565 -> 1965328 (decompressed 111.0 percent)
[04:07:30] Called DecompressByteArray: compressed_data_size=1769565 data_size=1965328, decompressed_data_size=1965328 diff=0
[04:07:30] - Digital signature verified
[04:07:30]
[04:07:30] Project: 7143 (Run 0, Clone 81, Gen 78)
[04:07:30]
[04:07:30] Assembly optimizations on if available.
[04:07:30] Entering M.D.
<snip>
[04:39:03] Completed 180000 out of 500000 steps (36%)
[04:39:48] - Couldn't send HTTP request to server
[04:39:48] + Could not connect to Work Server (results)
[04:39:48] (130.237.232.237:8080)
[04:39:48] + Retrying using alternative port
[04:39:48] Connecting to http://130.237.232.237:80/
[04:39:54] Completed 185000 out of 500000 steps (37%)
<snip>
[05:33:54] Completed 495000 out of 500000 steps (99%)
Writing final coordinates.
[05:34:46] Completed 500000 out of 500000 steps (100%)
Average load imbalance: 1.2 %
Part of the total run time spent waiting due to load imbalance: 0.5 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % Y 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 5230.290 5230.290 100.0
1h27:10
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 1172.955 78.192 16.519 1.453
Thanx for Using GROMACS - Have a Nice Day
[05:34:47] DynamicWrapper: Finished Work Unit: sleep=10000
[05:34:57]
[05:34:57] Finished Work Unit:
[05:34:57] - Reading up to 3707088 from "work/wudata_08.trr": Read 3707088
[05:34:57] trr file hash check passed.
[05:34:57] edr file hash check passed.
[05:34:57] logfile size: 58193
[05:34:57] Leaving Run
[05:35:00] - Writing 3800841 bytes of core data to disk...
[05:35:01] Done: 3800329 -> 3522096 (compressed to 92.6 percent)
[05:35:01] ... Done.
[05:35:01] - Shutting down core
[05:35:01]
[05:35:01] Folding@home Core Shutdown: FINISHED_UNIT
[05:35:02] CoreStatus = 64 (100)
[05:35:02] Unit 8 finished with 98 percent of time to deadline remaining.
[05:35:02] Updated performance fraction: 0.901920
[05:35:02] Sending work to server
[05:35:02] - Already sending work
[05:35:02] Trying to send all finished work units
[05:35:02] - Already sending work
[05:35:02] - Already sending work
[05:35:02] - Already sending work
[05:35:02] + Sent 0 of 3 completed units to the server
[05:35:02] - Preparing to get new work unit...
[05:35:02] Cleaning up work directory
[05:35:02] + Attempting to get work packet
[05:35:02] Passkey found
[05:35:02] - Will indicate memory of 386972 MB
[05:35:02] - Connecting to assignment server
[05:35:02] Connecting to http://assign.stanford.edu:8080/
[05:35:02] Posted data.
[05:35:02] Initial: 8F80; - Successful: assigned to (128.143.199.96).
[05:35:02] + News From Folding@Home: Welcome to Folding@Home
[05:35:02] Loaded queue successfully.
[05:35:02] Sent data
[05:35:02] Connecting to http://128.143.199.96:8080/
[05:35:03] Posted data.
[05:35:03] Initial: 0000; - Receiving payload (expected size: 1771815)
[05:35:04] - Downloaded at ~1730 kB/s
[05:35:04] - Averaged speed for that direction ~2114 kB/s
[05:35:04] + Received work.
[05:35:04] Trying to send all finished work units
[05:35:04] - Already sending work
[05:35:04] - Already sending work
[05:35:04] - Already sending work
[05:35:04] + Sent 0 of 3 completed units to the server
[05:35:04] + Closed connections
[05:35:04]
[05:35:04] + Processing work unit
[05:35:04] Core required: FahCore_a3.exe
[05:35:04] Core found.
[05:35:04] Working on queue slot 09 [October 6 05:35:04 UTC]
[05:35:04] + Working ...
[05:35:04] - Calling './FahCore_a3.exe -dir work/ -nice 19 -suffix 09 -np 32 -checkpoint 15 -forceasm -verbose -lifeline 18095 -version 634'
[05:35:04]
[05:35:04] *------------------------------*
[05:35:04] Folding@Home Gromacs SMP Core
[05:35:04] Version 2.27 (Dec. 15, 2010)
[05:35:04]
[05:35:04] Preparing to commence simulation
[05:35:04] - Assembly optimizations manually forced on.
[05:35:04] - Not checking prior termination.
[05:35:05] - Expanded 1771303 -> 1966492 (decompressed 111.0 percent)
[05:35:05] Called DecompressByteArray: compressed_data_size=1771303 data_size=1966492, decompressed_data_size=1966492 diff=0
[05:35:05] - Digital signature verified
[05:35:05]
[05:35:05] Project: 7131 (Run 0, Clone 10, Gen 167)
[05:35:05]
[05:35:05] Assembly optimizations on if available.
<snip>
[06:39:36] Completed 370000 out of 500000 steps (74%)
[06:39:49] - Couldn't send HTTP request to server
[06:39:49] + Could not connect to Work Server (results)
[06:39:49] (130.237.232.237:80)
[06:39:49] - Error: Could not transmit unit 06 (completed October 5) to work server.
[06:39:49] - 1 failed uploads of this unit.
[06:39:49] Keeping unit 06 in queue.
[06:39:49] Project: 7135 (Run 0, Clone 81, Gen 79)
[06:39:49] + Attempting to send results [October 6 06:39:49 UTC]
[06:39:49] - Reading file work/wuresults_07.dat from core
[06:39:49] (Read 3526664 bytes from disk)
[06:39:49] Connecting to http://128.143.199.96:8080/
[06:40:28] Completed 375000 out of 500000 steps (75%)
[06:40:32] Posted data.
[06:40:32] Initial: 0000; - Uploaded at ~80 kB/s
[06:40:32] - Averaged speed for that direction ~60 kB/s
[06:40:32] + Results successfully sent
[06:40:32] Thank you for your contribution to Folding@Home.
[06:40:32] + Number of Units Completed: 392
[06:40:32] Project: 7143 (Run 0, Clone 81, Gen 78)
[06:40:32] + Attempting to send results [October 6 06:40:32 UTC]
[06:40:32] - Reading file work/wuresults_08.dat from core
[06:40:32] (Read 3522608 bytes from disk)
[06:40:32] Connecting to http://128.143.199.96:8080/
[06:41:19] Posted data.
[06:41:19] Initial: 0000; - Uploaded at ~73 kB/s
[06:41:19] - Averaged speed for that direction ~62 kB/s
[06:41:19] + Results successfully sent
[06:41:19] Thank you for your contribution to Folding@Home.
[06:41:19] + Number of Units Completed: 393
[06:41:19] + Sent 2 of 3 completed units to the server
[06:41:19] - Autosend completed
[06:41:21] Completed 380000 out of 500000 steps (76%)
[06:42:13] Completed 385000 out of 500000 steps (77%)
[06:43:05] Completed 390000 out of 500000 steps (78%)
[06:43:58] Completed 395000 out of 500000 steps (79%)
[06:44:50] Completed 400000 out of 500000 steps (80%)
[06:45:43] Completed 405000 out of 500000 steps (81%)
[06:46:35] Completed 410000 out of 500000 steps (82%)
[06:47:28] Completed 415000 out of 500000 steps (83%)
[06:48:20] Completed 420000 out of 500000 steps (84%)
[06:49:12] Completed 425000 out of 500000 steps (85%)
[06:50:05] Completed 430000 out of 500000 steps (86%)
[06:50:57] Completed 435000 out of 500000 steps (87%)
[06:51:50] Completed 440000 out of 500000 steps (88%)
[06:52:42] Completed 445000 out of 500000 steps (89%)
[06:53:34] Completed 450000 out of 500000 steps (90%)
[06:54:26] Completed 455000 out of 500000 steps (91%)
[06:55:18] Completed 460000 out of 500000 steps (92%)
[06:56:10] Completed 465000 out of 500000 steps (93%)
[06:57:02] Completed 470000 out of 500000 steps (94%)
[06:57:55] Completed 475000 out of 500000 steps (95%)
[06:58:48] Completed 480000 out of 500000 steps (96%)
[06:59:40] Completed 485000 out of 500000 steps (97%)
[07:00:33] Completed 490000 out of 500000 steps (98%)
[07:01:25] Completed 495000 out of 500000 steps (99%)
[07:02:18] Completed 500000 out of 500000 steps (100%)
Writing final coordinates.
Average load imbalance: 1.2 %
Part of the total run time spent waiting due to load imbalance: 0.5 %
Steps where the load balancing was limited by -rdd, -rcon and/or -dds: X 0 % Y 0 %
Parallel run - timing based on wallclock.
NODE (s) Real (s) (%)
Time: 5227.187 5227.187 100.0
1h27:07
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 1174.876 78.298 16.529 1.452
Thanx for Using GROMACS - Have a Nice Day
[07:02:19] DynamicWrapper: Finished Work Unit: sleep=10000
[07:02:29]
[07:02:29] Finished Work Unit:
[07:02:29] - Reading up to 3711648 from "work/wudata_09.trr": Read 3711648
[07:02:29] trr file hash check passed.
[07:02:29] edr file hash check passed.
[07:02:29] logfile size: 58254
[07:02:29] Leaving Run
[07:02:30] - Writing 3805462 bytes of core data to disk...
[07:02:31] Done: 3804950 -> 3526447 (compressed to 92.6 percent)
[07:02:31] ... Done.
[07:02:32] - Shutting down core
[07:02:32]
[07:02:32] Folding@home Core Shutdown: FINISHED_UNIT
[07:02:32] CoreStatus = 64 (100)
[07:02:32] Unit 9 finished with 98 percent of time to deadline remaining.
[07:02:32] Updated performance fraction: 0.918499
[07:02:32] Sending work to server
[07:02:32] Project: 7131 (Run 0, Clone 10, Gen 167)
[07:02:32] + Attempting to send results [October 6 07:02:32 UTC]
[07:02:32] - Reading file work/wuresults_09.dat from core
[07:02:32] (Read 3526959 bytes from disk)
[07:02:32] Connecting to http://128.143.199.96:8080/
[07:03:13] Posted data.
[07:03:13] Initial: 0000; - Uploaded at ~84 kB/s
[07:03:13] - Averaged speed for that direction ~67 kB/s
[07:03:13] + Results successfully sent
[07:03:13] Thank you for your contribution to Folding@Home.
[07:03:13] + Number of Units Completed: 394
[07:03:13] Trying to send all finished work units
[07:03:13] Project: 6903 (Run 7, Clone 1, Gen 32)
[07:03:13] + Attempting to send results [October 6 07:03:13 UTC]
[07:03:13] - Reading file work/wuresults_06.dat from core
[07:03:13] (Read 222593315 bytes from disk)
[07:03:13] Connecting to http://130.237.232.237:8080/
[09:03:32] - Couldn't send HTTP request to server
[09:03:32] + Could not connect to Work Server (results)
[09:03:32] (130.237.232.237:8080)
[09:03:32] + Retrying using alternative port
[09:03:32] Connecting to http://130.237.232.237:80/
[11:03:33] - Couldn't send HTTP request to server
[11:03:33] + Could not connect to Work Server (results)
[11:03:33] (130.237.232.237:80)
[11:03:33] - Error: Could not transmit unit 06 (completed October 5) to work server.
[11:03:33] - 2 failed uploads of this unit.
[11:03:33] + Attempting to send results [October 6 11:03:33 UTC]
[11:03:33] - Reading file work/wuresults_06.dat from core
[11:03:33] (Read 222593315 bytes from disk)
[11:03:33] Connecting to http://130.237.165.141:8080/
[11:03:33] - Couldn't send HTTP request to server
[11:03:33] + Could not connect to Work Server (results)
[11:03:33] (130.237.165.141:8080)
[11:03:33] + Retrying using alternative port
[11:03:33] Connecting to http://130.237.165.141:80/
[11:03:34] - Couldn't send HTTP request to server
[11:03:34] + Could not connect to Work Server (results)
[11:03:34] (130.237.165.141:80)
[11:03:34] Could not transmit unit 06 to Collection server; keeping in queue.
[11:03:34] + Sent 0 of 1 completed units to the server
[11:03:34] - Preparing to get new work unit...
[11:03:34] Cleaning up work directory
[11:03:34] + Attempting to get work packet
[11:03:34] Passkey found
[11:03:34] - Will indicate memory of 386972 MB
[11:03:34] - Connecting to assignment server
[11:03:34] Connecting to http://assign.stanford.edu:8080/
[11:03:34] Posted data.
[11:03:34] Initial: 8F80; - Successful: assigned to (128.143.199.96).
[11:03:34] + News From Folding@Home: Welcome to Folding@Home
[11:03:34] Loaded queue successfully.
[11:03:34] Sent data
[11:03:34] Connecting to http://128.143.199.96:8080/
[11:03:35] Posted data.
[11:03:35] Initial: 0000; - Receiving payload (expected size: 1772682)
[11:03:37] - Downloaded at ~865 kB/s
[11:03:37] - Averaged speed for that direction ~1864 kB/s
[11:03:37] + Received work.
[11:03:37] Trying to send all finished work units
[11:03:37] Project: 6903 (Run 7, Clone 1, Gen 32)
[11:03:37] + Attempting to send results [October 6 11:03:37 UTC]
[11:03:37] - Reading file work/wuresults_06.dat from core
[11:03:37] (Read 222593315 bytes from disk)
[11:03:37] Connecting to http://130.237.232.237:8080/
Code: Select all
[folding@adcdbd7 folding]$ ./fah6 -smp 32 -verbosity 9 -forceasm -send all
Note: Please read the license agreement (fah6 -license). Further
use of this software requires that you have read and accepted this agreement.
64 cores detected
--- Opening Log file [October 6 11:12:35 UTC]
# Linux SMP Console Edition ###################################################
###############################################################################
Folding@Home Client Version 6.34
http://folding.stanford.edu
###############################################################################
###############################################################################
Launch directory: /apps/home/quayj/folding
Executable: ./fah6
Arguments: -smp 32 -verbosity 9 -forceasm -send all
[11:12:35] - Ask before connecting: No
[11:12:35] - User name: For_Caitlin (Team 14)
[11:12:35] - User ID: xxxx
[11:12:35] - Machine ID: 1
[11:12:35]
[11:12:36] Loaded queue successfully.
[11:12:36] Attempting to return result(s) to server...
[11:12:36] Trying to send all finished work units
[11:12:36] Project: 6903 (Run 7, Clone 1, Gen 32)
[11:12:36] + Attempting to send results [October 6 11:12:36 UTC]
[11:12:36] - Reading file work/wuresults_06.dat from core
[11:12:36] (Read 222593315 bytes from disk)
[11:12:36] Connecting to http://130.237.232.237:8080/
[11:24:59] ***** Got an Activate signal (2)
[11:24:59] Killing all core threads
Folding@Home Client Shutdown.
[folding@adcdbd7 folding]$ telnet 130.237.232.237 8080
Trying 130.237.232.237...
Connected to folding-2.pdc.kth.se (130.237.232.237).
Escape character is '^]'.
^]
telnet> quit
Connection closed.