Answer to: Nodes Mismated
Posted: Sun Feb 20, 2011 7:12 am
Hi everyone,
I noticed some output from fah to the terminal and googled it. I found a pretty old thread, which helped me understand the meaning.
The older thread mentioned number of cores. Yes... I was running -smp 5 as -smp 8 was making my cpu temp go high. I reseated the cooler and tried again ... now the temps are in mid 70s instead of 90.
I noticed some output from fah to the terminal and googled it. I found a pretty old thread, which helped me understand the meaning.
The older thread mentioned number of cores. Yes... I was running -smp 5 as -smp 8 was making my cpu temp go high. I reseated the cooler and tried again ... now the temps are in mid 70s instead of 90.
Code: Select all
[07:01:04] Project: 6067 (Run 1, Clone 86, Gen 97)
[07:01:04] Assembly optimizations on if available.
[07:01:04] Entering M.D.
Reading file work/wudata_02.tpr, VERSION 4.0.99_development_20090605 (single precision)
Starting 8 threads
Reading checkpoint file work/wudata_02.cpt generated: Sat Feb 19 21:26:50 2011
#nodes mismatch,
current program: 8
checkpoint file: 5
Gromacs binary or parallel settings not identical to previous run.
Continuation is exact, but is not guaranteed to be binary identical.
[07:01:10] Using Gromacs checkpoints
Making 1D domain decomposition 8 x 1 x 1
starting mdrun 'Mutant_scan'
49000004 steps, 98000.0 ps (continuing from step 48868820, 97737.6 ps).
[07:01:10] Resuming from checkpoint
[07:01:10] Verified work/wudata_02.log
[07:01:10] Verified work/wudata_02.trr
[07:01:10] Verified work/wudata_02.edr
[07:01:11] Completed 368816 out of 500000 steps (73%)