WU16404 INTERRUPTED

[seesturm]

Code: Select all

06:42:20:WU03:FS00:Starting
06:42:20:WU03:FS00:Removing old file './work/03/logfile_01-20200330-061020.txt'
06:42:20:WU03:FS00:Running FahCore: /home/ubuntu/FAHCoreWrapper /home/ubuntu/cores/cores.foldingathome.org/v7/lin/64bit/avx/Core_a7.fah/FahCore_a7 -dir 03 -suffix 01 -version 705 -lifeline 4172 -checkpoint 15 -np 29
06:42:20:WU03:FS00:Started FahCore on PID 37597
06:42:20:WU03:FS00:Core PID:37601
06:42:20:WU03:FS00:FahCore 0xa7 started
06:42:21:WU03:FS00:0xa7:*********************** Log Started 2020-03-30T06:42:20Z ***********************
06:42:21:WU03:FS00:0xa7:************************** Gromacs Folding@home Core ***************************
06:42:21:WU03:FS00:0xa7:       Type: 0xa7
06:42:21:WU03:FS00:0xa7:       Core: Gromacs
06:42:21:WU03:FS00:0xa7:       Args: -dir 03 -suffix 01 -version 705 -lifeline 37597 -checkpoint 15 -np
06:42:21:WU03:FS00:0xa7:             29
06:42:21:WU03:FS00:0xa7:************************************ CBang *************************************
06:42:21:WU03:FS00:0xa7:       Date: Nov 5 2019
06:42:21:WU03:FS00:0xa7:       Time: 06:06:57
06:42:21:WU03:FS00:0xa7:   Revision: 46c96f1aa8419571d83f3e63f9c99a0d602f6da9
06:42:21:WU03:FS00:0xa7:     Branch: master
06:42:21:WU03:FS00:0xa7:   Compiler: GNU 8.3.0
06:42:21:WU03:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie -fPIC
06:42:21:WU03:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
06:42:21:WU03:FS00:0xa7:       Bits: 64
06:42:21:WU03:FS00:0xa7:       Mode: Release
06:42:21:WU03:FS00:0xa7:************************************ System ************************************
06:42:21:WU03:FS00:0xa7:        CPU: AMD Ryzen Threadripper 1950X 16-Core Processor
06:42:21:WU03:FS00:0xa7:     CPU ID: AuthenticAMD Family 23 Model 1 Stepping 1
06:42:21:WU03:FS00:0xa7:       CPUs: 32
06:42:21:WU03:FS00:0xa7:     Memory: 62.84GiB
06:42:21:WU03:FS00:0xa7:Free Memory: 29.68GiB
06:42:21:WU03:FS00:0xa7:    Threads: POSIX_THREADS
06:42:21:WU03:FS00:0xa7: OS Version: 5.5
06:42:21:WU03:FS00:0xa7:Has Battery: false
06:42:21:WU03:FS00:0xa7: On Battery: false
06:42:21:WU03:FS00:0xa7: UTC Offset: 0
06:42:21:WU03:FS00:0xa7:        PID: 37601
06:42:21:WU03:FS00:0xa7:        CWD: /home/ubuntu/work
06:42:21:WU03:FS00:0xa7:******************************** Build - libFAH ********************************
06:42:21:WU03:FS00:0xa7:    Version: 0.0.18
06:42:21:WU03:FS00:0xa7:     Author: Joseph Coffland <[email protected]>
06:42:21:WU03:FS00:0xa7:  Copyright: 2019 foldingathome.org
06:42:21:WU03:FS00:0xa7:   Homepage: https://foldingathome.org/
06:42:21:WU03:FS00:0xa7:       Date: Nov 5 2019
06:42:21:WU03:FS00:0xa7:       Time: 06:13:26
06:42:21:WU03:FS00:0xa7:   Revision: 490c9aa2957b725af319379424d5c5cb36efb656
06:42:21:WU03:FS00:0xa7:     Branch: master
06:42:21:WU03:FS00:0xa7:   Compiler: GNU 8.3.0
06:42:21:WU03:FS00:0xa7:    Options: -std=c++11 -O3 -funroll-loops -fno-pie
06:42:21:WU03:FS00:0xa7:   Platform: linux2 4.19.0-5-amd64
06:42:21:WU03:FS00:0xa7:       Bits: 64
06:42:21:WU03:FS00:0xa7:       Mode: Release
06:42:21:WU03:FS00:0xa7:************************************ Build *************************************
06:42:21:WU03:FS00:0xa7:       SIMD: avx_256
06:42:21:WU03:FS00:0xa7:********************************************************************************
06:42:21:WU03:FS00:0xa7:Project: 16404 (Run 0, Clone 4416, Gen 5)
06:42:21:WU03:FS00:0xa7:Unit: 0x00000006a8f5c67d5e7eb90cc95af100
06:42:21:WU03:FS00:0xa7:Reading tar file core.xml
06:42:21:WU03:FS00:0xa7:Reading tar file frame5.tpr
06:42:21:WU03:FS00:0xa7:Digital signatures verified
06:42:21:WU03:FS00:0xa7:Reducing thread count from 29 to 28 to avoid domain decomposition by a prime number > 3
06:42:21:WU03:FS00:0xa7:Calling: mdrun -s frame5.tpr -o frame5.trr -x frame5.xtc -cpt 15 -nt 28
06:42:21:WU03:FS00:0xa7:Steps: first=2500000 total=500000
06:42:21:WU03:FS00:0xa7:ERROR:
06:42:21:WU03:FS00:0xa7:ERROR:-------------------------------------------------------
06:42:21:WU03:FS00:0xa7:ERROR:Program GROMACS, VERSION 5.0.4-20191026-456f0d636-unknown
06:42:21:WU03:FS00:0xa7:ERROR:Source code file: /host/debian-stable-64bit-core-a7-avx-release/gromacs-core/build/gromacs/src/gromacs/mdlib/domdec.c, line: 6902
06:42:21:WU03:FS00:0xa7:ERROR:
06:42:21:WU03:FS00:0xa7:ERROR:Fatal error:
06:42:21:WU03:FS00:0xa7:ERROR:There is no domain decomposition for 20 ranks that is compatible with the given box and a minimum cell size of 1.37225 nm
06:42:21:WU03:FS00:0xa7:ERROR:Change the number of ranks or mdrun option -rcon or -dds or your LINCS settings
06:42:21:WU03:FS00:0xa7:ERROR:Look in the log file for details on the domain decomposition
06:42:21:WU03:FS00:0xa7:ERROR:For more information and tips for troubleshooting, please check the GROMACS
06:42:21:WU03:FS00:0xa7:ERROR:website at http://www.gromacs.org/Documentation/Errors
06:42:21:WU03:FS00:0xa7:ERROR:-------------------------------------------------------
06:42:26:WU03:FS00:0xa7:WARNING:Unexpected exit() call
06:42:26:WU03:FS00:0xa7:WARNING:Unexpected exit from science code
06:42:26:WU03:FS00:0xa7:Saving result file ../logfile_01.txt
06:42:26:WU03:FS00:0xa7:Saving result file md.log
06:42:26:WU03:FS00:0xa7:Saving result file science.log
06:42:26:WU03:FS00:FahCore returned: INTERRUPTED (102 = 0x66)

[davidcoton]

Project scientist informed and has adjusted the project settings.

[Joe_H]

These WUs were supposed to be set to not be run on multiples of 5, another person reported a similar problem. If you still have the WU, try pausing and setting it to run on 18 or 12 CPU threads. The person running this project was contacted and fixed up a typo in the settings, let us know if you see any others like this.